Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003297A_C01 KMC003297A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S19159 finger protein EPF1 - garden petunia gi|20546|emb|CA... 112 3e-24
dbj|BAA21920.1| ZPT2-11 [Petunia x hybrida] 112 3e-24
ref|NP_180387.1| putative zinc-finger protein; protein id: At2g2... 105 4e-22
pir||S69193 probable finger protein Pszf1 - garden pea gi|861091... 105 4e-22
emb|CAA67233.1| zinc finger protein [Arabidopsis thaliana] gi|14... 102 3e-21
>pir||S19159 finger protein EPF1 - garden petunia gi|20546|emb|CAA43111.1|
DNA-binding protein [Petunia x hybrida]
Length = 281
Score = 112 bits (280), Expect = 3e-24
Identities = 62/117 (52%), Positives = 73/117 (61%), Gaps = 18/117 (15%)
Frame = -3
Query: 488 NNKAKIHECSICGSEFTSGQALGGHMRRHRASANAAAETNSNAITSTTV----------- 342
N+K+KIHEC+ICG+EFTSGQALGGHMRRHR A TN+ STT+
Sbjct: 166 NSKSKIHECAICGAEFTSGQALGGHMRRHRPPTITANITNTKVTLSTTIDDTSNYTSESS 225
Query: 341 -----VARPPRNILQLDLNLPAPPEDDLR--ESKFQFPATQKSMVLSAAPALVDCHY 192
+ PR IL LDLNLPAPPEDD +KF F ++ +V SAA ALVDCHY
Sbjct: 226 HDYDEIKEKPRIILSLDLNLPAPPEDDHHSDNTKFDFSGNKQCLVFSAA-ALVDCHY 281
Score = 38.9 bits (89), Expect = 0.036
Identities = 20/49 (40%), Positives = 25/49 (50%)
Frame = -3
Query: 512 GRSGFNGNNNKAKIHECSICGSEFTSGQALGGHMRRHRASANAAAETNS 366
G++GF ++EC C F S QALGGH H+ S AAE S
Sbjct: 83 GKAGFY-------VYECKTCNRTFPSFQALGGHRTSHKKSKTIAAEKTS 124
>dbj|BAA21920.1| ZPT2-11 [Petunia x hybrida]
Length = 282
Score = 112 bits (279), Expect = 3e-24
Identities = 58/121 (47%), Positives = 77/121 (62%), Gaps = 11/121 (9%)
Frame = -3
Query: 521 LQLGRSGFNGNN-----------NKAKIHECSICGSEFTSGQALGGHMRRHRASANAAAE 375
LQ+ + N NN NK ++HECSICG+EFTSGQALGGHMRRHR N+ A
Sbjct: 163 LQISNNNINNNNSNNNNNNNIIKNKNRVHECSICGAEFTSGQALGGHMRRHRPLPNSIAI 222
Query: 374 TNSNAITSTTVVARPPRNILQLDLNLPAPPEDDLRESKFQFPATQKSMVLSAAPALVDCH 195
+++ ++ + RN L LDLNLPAP +D E+KF F + ++ +V SA+P LVDCH
Sbjct: 223 ASTSHELESSHEIKNTRNFLSLDLNLPAPEDDHRPETKFSFASKEQVIVFSASP-LVDCH 281
Query: 194 Y 192
Y
Sbjct: 282 Y 282
>ref|NP_180387.1| putative zinc-finger protein; protein id: At2g28200.1 [Arabidopsis
thaliana] gi|25352202|pir||A84682 probable zinc-finger
protein [imported] - Arabidopsis thaliana
gi|4803961|gb|AAD29833.1| putative zinc-finger protein
[Arabidopsis thaliana]
Length = 284
Score = 105 bits (261), Expect = 4e-22
Identities = 62/110 (56%), Positives = 69/110 (62%), Gaps = 12/110 (10%)
Frame = -3
Query: 485 NKA-KIHECSICGSEFTSGQALGGHMRRHRASAN------AAAETNSNAITSTTVV---- 339
NKA K+HECSICGSEFTSGQALGGHMRRHR + A AE + N+ +
Sbjct: 182 NKANKVHECSICGSEFTSGQALGGHMRRHRTAVTTISPVAATAEVSRNSTEEEIEINIGR 241
Query: 338 -ARPPRNILQLDLNLPAPPEDDLRESKFQFPATQKSMVLSAAPALVDCHY 192
R L LDLNLPA PEDDLRESKFQ +V SA PAL+DCHY
Sbjct: 242 SMEQQRKYLPLDLNLPA-PEDDLRESKFQ------GIVFSATPALIDCHY 284
Score = 35.4 bits (80), Expect = 0.40
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 497 NGNNNKAKIHECSICGSEFTSGQALGGHMRRHRASANAAAETNSNAIT 354
+ N+ ++EC C F+S QALGGH H+ + E +T
Sbjct: 104 SSENSSFYVYECKTCNRTFSSFQALGGHRASHKKPRTSTEEKTRLPLT 151
>pir||S69193 probable finger protein Pszf1 - garden pea
gi|861091|emb|CAA60828.1| putative zinc finger protein
[Pisum sativum]
Length = 273
Score = 105 bits (261), Expect = 4e-22
Identities = 59/106 (55%), Positives = 67/106 (62%), Gaps = 4/106 (3%)
Frame = -3
Query: 497 NGNNNKA----KIHECSICGSEFTSGQALGGHMRRHRASANAAAETNSNAITSTTVVARP 330
+GNNNK K+HECSICG+EFTSGQALGGHMRRHRA N N + T
Sbjct: 187 HGNNNKPNRSNKVHECSICGAEFTSGQALGGHMRRHRACTNKNNNNNVGDVHGKT----- 241
Query: 329 PRNILQLDLNLPAPPEDDLRESKFQFPATQKSMVLSAAPALVDCHY 192
RNIL+LDLNLPA PE+DLR+S FQF PA+V CHY
Sbjct: 242 -RNILELDLNLPA-PEEDLRDSTFQF------------PAMVGCHY 273
Score = 32.0 bits (71), Expect = 4.5
Identities = 24/69 (34%), Positives = 29/69 (41%), Gaps = 10/69 (14%)
Frame = -3
Query: 485 NKAKIHECSICGSEFTSGQALGGHMRRHR-------ASANAAAETNS---NAITSTTVVA 336
N + +EC C F S QALGGH H+ SA E N+ N ST
Sbjct: 108 NGFESYECKTCNRFFHSFQALGGHRASHKKPKMKEIISAGETEEQNNHIHNKNVSTISPL 167
Query: 335 RPPRNILQL 309
PP L+L
Sbjct: 168 VPPHVSLEL 176
>emb|CAA67233.1| zinc finger protein [Arabidopsis thaliana]
gi|1418339|emb|CAA67236.1| zinc finger protein
[Arabidopsis thaliana]
Length = 284
Score = 102 bits (254), Expect = 3e-21
Identities = 61/110 (55%), Positives = 68/110 (61%), Gaps = 12/110 (10%)
Frame = -3
Query: 485 NKA-KIHECSICGSEFTSGQALGGHMRRHRASAN------AAAETNSNAITSTTVV---- 339
NKA K+HECSICGSEFTSGQALGGHMRRHR + A AE + N+ +
Sbjct: 182 NKANKVHECSICGSEFTSGQALGGHMRRHRTAVTTISPVAATAEVSRNSTEEEIEINIGR 241
Query: 338 -ARPPRNILQLDLNLPAPPEDDLRESKFQFPATQKSMVLSAAPALVDCHY 192
R L LDLNLPA P DDLRESKFQ +V SA PAL+DCHY
Sbjct: 242 SMEQQRKYLPLDLNLPA-PGDDLRESKFQ------GIVFSATPALIDCHY 284
Score = 35.4 bits (80), Expect = 0.40
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 497 NGNNNKAKIHECSICGSEFTSGQALGGHMRRHRASANAAAETNSNAIT 354
+ N+ ++EC C F+S QALGGH H+ + E +T
Sbjct: 104 SSENSSFYVYECKTCNRTFSSFQALGGHRASHKKPRTSTEEKTRLPLT 151
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,120,469
Number of Sequences: 1393205
Number of extensions: 11287072
Number of successful extensions: 61548
Number of sequences better than 10.0: 380
Number of HSP's better than 10.0 without gapping: 39553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61173
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
