Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003294A_C01 KMC003294A_c01
(706 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00105204.1| hypothetical protein [Prochlorococcus marinus ... 37 0.20
gb|EAA08912.1| agCP7833 [Anopheles gambiae str. PEST] 32 6.5
dbj|BAB91077.1| basic 7S globulin isoform [Glycine max] 32 6.5
>gb|ZP_00105204.1| hypothetical protein [Prochlorococcus marinus subsp. pastoris str.
CCMP1378]
Length = 330
Score = 37.4 bits (85), Expect = 0.20
Identities = 20/49 (40%), Positives = 31/49 (62%)
Frame = +1
Query: 214 LILLYTTYMHTKLLFLSVPWNINVFSSLGIGNILWLTILFFKQNTASKA 360
L+ L+ ++ TK+ ++ NIN FSSL G I++L ILFFK + + A
Sbjct: 172 LLYLFLVFLSTKIKYIK---NINYFSSLITGIIIYLPILFFKDLSTATA 217
>gb|EAA08912.1| agCP7833 [Anopheles gambiae str. PEST]
Length = 811
Score = 32.3 bits (72), Expect = 6.5
Identities = 22/65 (33%), Positives = 31/65 (46%), Gaps = 9/65 (13%)
Frame = -3
Query: 440 CFFSKVVCTSVPLD---------T*HLAFLS*GVKNALDAVFCLKNRIVSQSMFPIPREL 288
C + ++ T P+D T +LA S GVK LD L N+ V S F IP E+
Sbjct: 614 CMYENILLTG-PMDQISRLHRGNTVYLACYS-GVKKCLDDAHALANKAVQDSSFTIPEEV 671
Query: 287 KTFIF 273
+ +F
Sbjct: 672 QASVF 676
>dbj|BAB91077.1| basic 7S globulin isoform [Glycine max]
Length = 433
Score = 32.3 bits (72), Expect = 6.5
Identities = 16/57 (28%), Positives = 21/57 (36%)
Frame = +3
Query: 405 WN*CTHHFRKEAVHAPFSHKITSCFPEKQQILIFPQISMM*KHSMICGSTQSSPMVQ 575
W C H+ + APF H Q L P S H CG ++P+ Q
Sbjct: 79 WVNCEQHYSSKTYQAPFCHSTQCSRANTHQCLSCPAASRPGCHKNTCGLMSTNPITQ 135
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 601,415,569
Number of Sequences: 1393205
Number of extensions: 13130912
Number of successful extensions: 30196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30186
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
