Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003291A_C01 KMC003291A_c01
(639 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q42961|PGKH_TOBAC Phosphoglycerate kinase, chloroplast precur... 211 9e-54
pir||T07014 phosphoglycerate kinase (EC 2.7.2.3) precursor, chlo... 209 2e-53
sp|P12782|PGKH_WHEAT Phosphoglycerate kinase, chloroplast precur... 205 5e-52
dbj|BAA33803.1| chloroplast phosphoglycerate kinase [Populus nigra] 202 2e-51
gb|AAC32142.1| phosphoglycerate kinase [Picea mariana] 202 3e-51
>sp|Q42961|PGKH_TOBAC Phosphoglycerate kinase, chloroplast precursor
gi|7434546|pir||T03660 phosphoglycerate kinase (EC
2.7.2.3) precursor, chloroplast - common tobacco
gi|1161600|emb|CAA88841.1| phosphoglycerate kinase
[Nicotiana tabacum]
Length = 481
Score = 211 bits (536), Expect = 9e-54
Identities = 106/115 (92%), Positives = 112/115 (97%), Gaps = 1/115 (0%)
Frame = -1
Query: 639 DGWMGLDIGPDSIKSFSDALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVT 460
DGWMGLDIGPDS+K+F+DALDTT+T+IWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVT
Sbjct: 367 DGWMGLDIGPDSVKTFNDALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVT 426
Query: 459 TIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKELPGVLALDEA-VPVAV 298
TIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGK LPGV+ALDEA PVAV
Sbjct: 427 TIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKVLPGVIALDEADAPVAV 481
>pir||T07014 phosphoglycerate kinase (EC 2.7.2.3) precursor, chloroplast -
potato gi|3328122|gb|AAC26785.1| phosphoglycerate kinase
precursor [Solanum tuberosum]
Length = 482
Score = 209 bits (533), Expect = 2e-53
Identities = 106/115 (92%), Positives = 111/115 (96%), Gaps = 1/115 (0%)
Frame = -1
Query: 639 DGWMGLDIGPDSIKSFSDALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVT 460
DGWMGLDIGPDSIK+F+DALDTT+T+IWNGPMGVFEFDKFA GTEAIAKKLADLSGKGVT
Sbjct: 368 DGWMGLDIGPDSIKTFNDALDTTKTVIWNGPMGVFEFDKFATGTEAIAKKLADLSGKGVT 427
Query: 459 TIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKELPGVLALDEA-VPVAV 298
TIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGK LPGV+ALDEA PVAV
Sbjct: 428 TIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKVLPGVIALDEADAPVAV 482
>sp|P12782|PGKH_WHEAT Phosphoglycerate kinase, chloroplast precursor gi|66912|pir||TVWTGC
phosphoglycerate kinase (EC 2.7.2.3) precursor,
chloroplast - wheat gi|21833|emb|CAA33303.1|
phosphoglycerate kinase (AA 1 - 480) [Triticum aestivum]
gi|3293043|emb|CAA51931.1| phosphoglycerate kinase
[Triticum aestivum]
Length = 480
Score = 205 bits (521), Expect = 5e-52
Identities = 101/110 (91%), Positives = 107/110 (96%)
Frame = -1
Query: 639 DGWMGLDIGPDSIKSFSDALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVT 460
DGWMGLDIGPDS+K+F+DALDTTQTIIWNGPMGVFEFDKFAVGTE+IAKKLA+LS KGVT
Sbjct: 364 DGWMGLDIGPDSVKTFNDALDTTQTIIWNGPMGVFEFDKFAVGTESIAKKLAELSKKGVT 423
Query: 459 TIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKELPGVLALDEAV 310
TIIGGGDSVAAVEKVGVA VMSHISTGGGASLELLEGKELPGV+ALDE V
Sbjct: 424 TIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVVALDEGV 473
>dbj|BAA33803.1| chloroplast phosphoglycerate kinase [Populus nigra]
Length = 481
Score = 202 bits (515), Expect = 2e-51
Identities = 101/114 (88%), Positives = 108/114 (94%)
Frame = -1
Query: 639 DGWMGLDIGPDSIKSFSDALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVT 460
DGWMGLDIGP+S+K+FS+AL TTQT+IWNGPMGVFEF+KFA GTEAIAKKLA+LSGKGVT
Sbjct: 368 DGWMGLDIGPESVKTFSEALGTTQTVIWNGPMGVFEFEKFANGTEAIAKKLAELSGKGVT 427
Query: 459 TIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKELPGVLALDEAVPVAV 298
TIIGGGDSVAAVEKVGVA VMSHISTGGGASLELLEGKELPGVLALDE VAV
Sbjct: 428 TIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVLALDEVERVAV 481
>gb|AAC32142.1| phosphoglycerate kinase [Picea mariana]
Length = 151
Score = 202 bits (514), Expect = 3e-51
Identities = 100/114 (87%), Positives = 108/114 (94%)
Frame = -1
Query: 639 DGWMGLDIGPDSIKSFSDALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVT 460
DGWMGLDIG DSIK+FS+ALDTT+T+IWNGPMGVFEFDKF++GT +IAKKLA+LSGKGVT
Sbjct: 38 DGWMGLDIGADSIKTFSEALDTTKTVIWNGPMGVFEFDKFSLGTTSIAKKLAELSGKGVT 97
Query: 459 TIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKELPGVLALDEAVPVAV 298
TIIGGGDSVAAVEKVGVA MSHISTGGGASLELLEGK LPGVLALDEAVPV V
Sbjct: 98 TIIGGGDSVAAVEKVGVAEKMSHISTGGGASLELLEGKTLPGVLALDEAVPVTV 151
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 590,555,543
Number of Sequences: 1393205
Number of extensions: 13302418
Number of successful extensions: 43382
Number of sequences better than 10.0: 413
Number of HSP's better than 10.0 without gapping: 39639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42570
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
