Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003288A_C01 KMC003288A_c01
(662 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567979.1| putative protein; protein id: At4g35220.1, supp... 107 1e-22
ref|NP_567957.1| putative protein; protein id: At4g34180.1, supp... 82 5e-15
ref|NP_175091.1| hypothetical protein; protein id: At1g44542.1 [... 82 6e-15
ref|NP_782444.1| polyketide cyclase [Clostridium tetani E88] gi|... 56 4e-07
gb|ZP_00024531.1| hypothetical protein [Ralstonia metallidurans] 46 5e-04
>ref|NP_567979.1| putative protein; protein id: At4g35220.1, supported by cDNA:
1368., supported by cDNA: gi_13937203, supported by
cDNA: gi_18491126 [Arabidopsis thaliana]
gi|13937204|gb|AAK50095.1|AF372956_1
AT4g35220/F23E12_220 [Arabidopsis thaliana]
gi|18491127|gb|AAL69532.1| AT4g35220/F23E12_220
[Arabidopsis thaliana] gi|21537400|gb|AAM61741.1|
unknown [Arabidopsis thaliana]
Length = 272
Score = 107 bits (267), Expect = 1e-22
Identities = 56/71 (78%), Positives = 57/71 (79%)
Frame = -3
Query: 648 NTDIKXCXN*LPICAAFDDLIPSHLVFLKDREIILVEALKLDDVPAGLYSVHCLPLRLAG 469
NTDIK AA+DDLIPSHLVFLKDRE ILVE LKLD V AGLYSVHCLPLRL G
Sbjct: 201 NTDIKLVGIDYLSVAAYDDLIPSHLVFLKDRETILVEGLKLDGVKAGLYSVHCLPLRLVG 260
Query: 468 AEGSPIRCILI 436
AEGSPIRCILI
Sbjct: 261 AEGSPIRCILI 271
>ref|NP_567957.1| putative protein; protein id: At4g34180.1, supported by cDNA:
8686., supported by cDNA: gi_14335097, supported by
cDNA: gi_16226602 [Arabidopsis thaliana]
gi|14335098|gb|AAK59828.1| AT4g34180/F28A23_60
[Arabidopsis thaliana]
gi|16226603|gb|AAL16211.1|AF428442_1 AT4g34180/F28A23_60
[Arabidopsis thaliana] gi|21617901|gb|AAM66951.1|
unknown [Arabidopsis thaliana]
gi|21928057|gb|AAM78057.1| AT4g34180/F28A23_60
[Arabidopsis thaliana]
Length = 255
Score = 82.4 bits (202), Expect = 5e-15
Identities = 44/72 (61%), Positives = 50/72 (69%)
Frame = -3
Query: 648 NTDIKXCXN*LPICAAFDDLIPSHLVFLKDREIILVEALKLDDVPAGLYSVHCLPLRLAG 469
NTDIK AAF++ +H V LK R+II VEALKLD V G YS+HCLPLRL G
Sbjct: 184 NTDIKLIGLDYLSFAAFEESPATHRVILKGRDIIPVEALKLDGVEVGTYSLHCLPLRLVG 243
Query: 468 AEGSPIRCILIK 433
AEG+P RCILIK
Sbjct: 244 AEGAPTRCILIK 255
>ref|NP_175091.1| hypothetical protein; protein id: At1g44542.1 [Arabidopsis
thaliana] gi|13876507|gb|AAK43483.1|AC084807_8
hypothetical protein [Arabidopsis thaliana]
Length = 271
Score = 82.0 bits (201), Expect = 6e-15
Identities = 42/72 (58%), Positives = 51/72 (70%)
Frame = -3
Query: 648 NTDIKXCXN*LPICAAFDDLIPSHLVFLKDREIILVEALKLDDVPAGLYSVHCLPLRLAG 469
NTDIK AA+D+ +H L+ R+II VEALKLDDV G+Y++HCLPLRL G
Sbjct: 200 NTDIKLVGLDYLSFAAYDEAPATHRFILERRDIIPVEALKLDDVEVGMYTLHCLPLRLVG 259
Query: 468 AEGSPIRCILIK 433
AEG+P RCILIK
Sbjct: 260 AEGAPTRCILIK 271
>ref|NP_782444.1| polyketide cyclase [Clostridium tetani E88]
gi|28203941|gb|AAO36381.1| polyketide cyclase
[Clostridium tetani E88]
Length = 206
Score = 56.2 bits (134), Expect = 4e-07
Identities = 26/52 (50%), Positives = 38/52 (73%)
Frame = -3
Query: 585 PSHLVFLKDREIILVEALKLDDVPAGLYSVHCLPLRLAGAEGSPIRCILIKN 430
PSH V L ++ I+++E L+L DV G Y + CLPL++ G+E SP+R +LIKN
Sbjct: 156 PSHKVIL-EKGIVIIEDLQLKDVKEGNYFLSCLPLKIKGSEASPVRAVLIKN 206
>gb|ZP_00024531.1| hypothetical protein [Ralstonia metallidurans]
Length = 130
Score = 45.8 bits (107), Expect = 5e-04
Identities = 19/43 (44%), Positives = 31/43 (71%)
Frame = -3
Query: 567 LKDREIILVEALKLDDVPAGLYSVHCLPLRLAGAEGSPIRCIL 439
++D ++ ++E + LD+VPAG Y + LPLRLA + SP+R +L
Sbjct: 84 VRDHQLAILEGIVLDEVPAGDYELIALPLRLATLDASPVRAVL 126
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 562,381,315
Number of Sequences: 1393205
Number of extensions: 12071155
Number of successful extensions: 26251
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 25474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26242
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
