Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003278A_C01 KMC003278A_c01
(457 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B71610 WD40 WEB-1 homolog PFB0640c - malaria parasite (Plas... 32 3.0
ref|NP_473056.2| hypothetical protein, conserved [Plasmodium fal... 32 3.0
ref|NP_811108.1| putative outer membrane protein, probably invol... 31 6.8
gb|EAA16229.1| hypothetical protein [Plasmodium yoelii yoelii] 31 6.8
gb|ZP_00037459.1| hypothetical protein [Enterococcus faecium] 31 6.8
>pir||B71610 WD40 WEB-1 homolog PFB0640c - malaria parasite (Plasmodium
falciparum)
Length = 1438
Score = 32.0 bits (71), Expect = 3.0
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 391 SSPPPPPITPYLFHPEIINNTM 456
S PPP + P FH +IINNTM
Sbjct: 1062 SIQPPPSVPPTKFHTQIINNTM 1083
>ref|NP_473056.2| hypothetical protein, conserved [Plasmodium falciparum 3D7]
gi|23503401|gb|AAC71917.2| hypothetical protein,
conserved [Plasmodium falciparum 3D7]
Length = 1460
Score = 32.0 bits (71), Expect = 3.0
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 391 SSPPPPPITPYLFHPEIINNTM 456
S PPP + P FH +IINNTM
Sbjct: 1062 SIQPPPSVPPTKFHTQIINNTM 1083
>ref|NP_811108.1| putative outer membrane protein, probably involved in nutrient
binding [Bacteroides thetaiotaomicron VPI-5482]
gi|29339506|gb|AAO77302.1| putative outer membrane
protein, probably involved in nutrient binding
[Bacteroides thetaiotaomicron VPI-5482]
Length = 580
Score = 30.8 bits (68), Expect = 6.8
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -2
Query: 435 WVKEVWGDWRWGRRRNDE-EGYFE 367
W+ W W+WGR+ ND+ +G +E
Sbjct: 97 WIPGPWDMWKWGRQNNDDAKGQYE 120
>gb|EAA16229.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 175
Score = 30.8 bits (68), Expect = 6.8
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = +1
Query: 376 TFFIISSPPPPPITPYLFH 432
T +++ PPPPP YLFH
Sbjct: 80 TIYVLPEPPPPPFLIYLFH 98
>gb|ZP_00037459.1| hypothetical protein [Enterococcus faecium]
Length = 160
Score = 30.8 bits (68), Expect = 6.8
Identities = 13/24 (54%), Positives = 18/24 (74%)
Frame = -3
Query: 134 PFTLLFLSISVSGTLYILYSLINI 63
P ++LS+ VSG L I+YSLIN+
Sbjct: 123 PMGYVYLSVPVSGVLIIIYSLINL 146
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 365,828,807
Number of Sequences: 1393205
Number of extensions: 6798019
Number of successful extensions: 22501
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22324
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
