Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003274A_C01 KMC003274A_c01
(248 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565830.2| auxin-regulated protein; protein id: At2g36000.... 39 0.025
ref|NP_700499.1| PF70 protein [Plasmodium falciparum 3D7] gi|234... 30 6.8
>ref|NP_565830.2| auxin-regulated protein; protein id: At2g36000.1, supported by
cDNA: gi_14532493, supported by cDNA: gi_14532527,
supported by cDNA: gi_18655376 [Arabidopsis thaliana]
gi|25408435|pir||F84775 hypothetical protein At2g36000
[imported] - Arabidopsis thaliana
gi|14532494|gb|AAK63975.1| At2g36000/F11F19.9
[Arabidopsis thaliana] gi|14532528|gb|AAK63992.1|
At2g36000/F11F19.9 [Arabidopsis thaliana]
gi|18655377|gb|AAL76144.1| At2g36000/F11F19.9
[Arabidopsis thaliana]
Length = 333
Score = 38.5 bits (88), Expect = 0.025
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = -2
Query: 163 GVCFTLPVLLKTSEVTFRNRLDLCVNSSTP 74
GV F LPV+LKT+E FR+ L++C +SS P
Sbjct: 291 GVRFPLPVMLKTNEAGFRDTLEVCCDSSPP 320
>ref|NP_700499.1| PF70 protein [Plasmodium falciparum 3D7]
gi|23494888|gb|AAN35223.1|AE014829_23 PF70 protein
[Plasmodium falciparum 3D7]
Length = 631
Score = 30.4 bits (67), Expect = 6.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 45 VHQQRRCCPEGVEEFTHKSNLFLNVTSLVFNNTGRVKHTPNSS 173
V +Q GVE +SNLF N + N+TG +K N S
Sbjct: 158 VDEQPEASTSGVERMKERSNLFANNLTEEKNDTGDIKKEENKS 200
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,505,362
Number of Sequences: 1393205
Number of extensions: 3423761
Number of successful extensions: 6939
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6939
length of database: 448,689,247
effective HSP length: 58
effective length of database: 367,883,357
effective search space used: 8829200568
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
