Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003267A_C01 KMC003267A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S32644 nucleolin - African clawed frog gi|295899|emb|CAA514... 42 0.005
ref|NP_295347.1| RNA helicase [Deinococcus radiodurans] 41 0.009
pir||T15667 hypothetical protein C27H5.3 - Caenorhabditis elegans 39 0.025
ref|NP_495483.1| Protein -binding like (45.2 kD) [Caenorhabditis... 39 0.025
ref|NP_491108.1| Second step splicing factor 1 [Caenorhabditis e... 38 0.073
>pir||S32644 nucleolin - African clawed frog gi|295899|emb|CAA51460.1| nucleolin
[Xenopus laevis]
Length = 705
Score = 41.6 bits (96), Expect = 0.005
Identities = 24/49 (48%), Positives = 25/49 (50%)
Frame = -2
Query: 500 RGNYGNGRSYVRGDFNGWGEFGLRNGPRGGFSIRGGDGYQRSEGAGAGR 354
RG +G GR G G G FG R G RGGF RGG G R G GR
Sbjct: 638 RGGFGGGRGGFGGRGGGRGGFGGRGGGRGGFGGRGGGG-GRGRGGFGGR 685
>ref|NP_295347.1| RNA helicase [Deinococcus radiodurans]
Length = 560
Score = 40.8 bits (94), Expect = 0.009
Identities = 28/76 (36%), Positives = 32/76 (41%), Gaps = 6/76 (7%)
Frame = -2
Query: 497 GNYGNGRSYV---RGDFNGWGEFGLRNGPRGGFSIRGGDGYQRSEGAG---AGRMNRVPA 336
G Y GR Y G G+G G G RGG+ RGG+ R EG G R R PA
Sbjct: 405 GGYQGGRGYRDRDEGGRGGYGRGGNSGGGRGGYGNRGGNSGGRGEGGGRWSRERDERGPA 464
Query: 335 VNAVNSTAQSTAVRVP 288
+ TA S P
Sbjct: 465 PRGTSPTASSCPTAEP 480
>pir||T15667 hypothetical protein C27H5.3 - Caenorhabditis elegans
Length = 545
Score = 39.3 bits (90), Expect = 0.025
Identities = 24/55 (43%), Positives = 26/55 (46%), Gaps = 4/55 (7%)
Frame = -2
Query: 500 RGNYGNGRSYVRGDFNGWGEFGLRNGPRGGF--SIRGGD--GYQRSEGAGAGRMN 348
RG G R RG F G G R G RGGF RGGD G++ G G G N
Sbjct: 435 RGGGGGFRGGDRGGFRGGDRGGFRGGDRGGFRGGDRGGDRGGFRGGRGVGGGNAN 489
Score = 31.6 bits (70), Expect = 5.2
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 500 RGNYGNGRSYVRGDFNGWGEFGLRNGPRGGFSIRGG-DGYQRSEGAGAG 357
RG +G GR G G G FG G RGG+ GG G+ G G G
Sbjct: 398 RGGFGGGRG---GPMGGRGGFG---GDRGGYGGGGGRGGFDGGRGGGGG 440
>ref|NP_495483.1| Protein -binding like (45.2 kD) [Caenorhabditis elegans]
gi|15145286|gb|AAC46657.2| Hypothetical protein C27H5.3
[Caenorhabditis elegans]
Length = 448
Score = 39.3 bits (90), Expect = 0.025
Identities = 24/55 (43%), Positives = 26/55 (46%), Gaps = 4/55 (7%)
Frame = -2
Query: 500 RGNYGNGRSYVRGDFNGWGEFGLRNGPRGGF--SIRGGD--GYQRSEGAGAGRMN 348
RG G R RG F G G R G RGGF RGGD G++ G G G N
Sbjct: 338 RGGGGGFRGGDRGGFRGGDRGGFRGGDRGGFRGGDRGGDRGGFRGGRGVGGGNAN 392
Score = 31.6 bits (70), Expect = 5.2
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 500 RGNYGNGRSYVRGDFNGWGEFGLRNGPRGGFSIRGG-DGYQRSEGAGAG 357
RG +G GR G G G FG G RGG+ GG G+ G G G
Sbjct: 301 RGGFGGGRG---GPMGGRGGFG---GDRGGYGGGGGRGGFDGGRGGGGG 343
>ref|NP_491108.1| Second step splicing factor 1 [Caenorhabditis elegans]
gi|7505687|pir||T32923 hypothetical protein K09H9.6 -
Caenorhabditis elegans gi|2804465|gb|AAB97575.1|
Hypothetical protein K09H9.6 [Caenorhabditis elegans]
Length = 608
Score = 37.7 bits (86), Expect = 0.073
Identities = 23/49 (46%), Positives = 24/49 (48%)
Frame = -2
Query: 500 RGNYGNGRSYVRGDFNGWGEFGLRNGPRGGFSIRGGDGYQRSEGAGAGR 354
RG G+ RG F G G G R G RGGF RGG G R G G R
Sbjct: 552 RGRSGDRDGGFRGGFGGRGGGGFRGGDRGGFRGRGGGGGFRG-GRGGDR 599
Score = 30.8 bits (68), Expect = 8.9
Identities = 21/54 (38%), Positives = 25/54 (45%), Gaps = 2/54 (3%)
Frame = -2
Query: 500 RGNYGNGRSYVRGDFNGWGEFGLRNGPRGGFSIRGGD--GYQRSEGAGAGRMNR 345
R Y + R RG F G GE RGGF RGGD G++ + G G R
Sbjct: 473 RPRYEDSRGGFRGGFRGRGE------DRGGFRGRGGDRGGFRGRDRDGGGFRGR 520
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,770,614
Number of Sequences: 1393205
Number of extensions: 9202378
Number of successful extensions: 42824
Number of sequences better than 10.0: 296
Number of HSP's better than 10.0 without gapping: 29856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40219
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
