Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003265A_C02 KMC003265A_c02
(594 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D84421 probable amino acid permease [imported] - Arabidopsi... 256 2e-67
gb|AAL86294.1| putative amino acid or GABA permease [Arabidopsis... 256 2e-67
ref|NP_565254.1| amino acid permease family; protein id: At2g011... 256 2e-67
dbj|BAB63860.1| contains EST AU031682(R0503)~similar to GABA per... 238 3e-62
dbj|BAB63858.1| contains EST D23882(R0503)~similar to GABA perme... 234 5e-61
>pir||D84421 probable amino acid permease [imported] - Arabidopsis thaliana
Length = 517
Score = 256 bits (654), Expect = 2e-67
Identities = 119/157 (75%), Positives = 136/157 (85%)
Frame = -3
Query: 583 RMTYAFSRDGAMPLSSLWHKVNKQEVPIYAVWLSTVISFCMALTSLGSTVAFDAMVSIAT 404
RM YAFSRDGAMP+S LWHKVN +EVPI AVWLS +ISFCMALTSLGS VAF AMVSIAT
Sbjct: 359 RMAYAFSRDGAMPMSPLWHKVNSREVPINAVWLSALISFCMALTSLGSIVAFQAMVSIAT 418
Query: 403 IGLYIAYALPIFFRVTLARKSFAPGPFNLGRYGTFVGWISVIWVVTISILFSLPVSYPIT 224
IGLYIAYA+PI RVTLAR +F PGPF+LG+YG VGW++V+WVVTIS+LFSLPV+YPIT
Sbjct: 419 IGLYIAYAIPIILRVTLARNTFVPGPFSLGKYGMVVGWVAVLWVVTISVLFSLPVAYPIT 478
Query: 223 IETFNYTPVAVGCLLLLVISYWIFSGRHWFQGPITNI 113
ET NYTPVAV L+ + +SYW+FS RHWF GPI+NI
Sbjct: 479 AETLNYTPVAVAGLVAITLSYWLFSARHWFTGPISNI 515
>gb|AAL86294.1| putative amino acid or GABA permease [Arabidopsis thaliana]
Length = 516
Score = 256 bits (654), Expect = 2e-67
Identities = 119/157 (75%), Positives = 136/157 (85%)
Frame = -3
Query: 583 RMTYAFSRDGAMPLSSLWHKVNKQEVPIYAVWLSTVISFCMALTSLGSTVAFDAMVSIAT 404
RM YAFSRDGAMP+S LWHKVN +EVPI AVWLS +ISFCMALTSLGS VAF AMVSIAT
Sbjct: 358 RMAYAFSRDGAMPMSPLWHKVNSREVPINAVWLSALISFCMALTSLGSIVAFQAMVSIAT 417
Query: 403 IGLYIAYALPIFFRVTLARKSFAPGPFNLGRYGTFVGWISVIWVVTISILFSLPVSYPIT 224
IGLYIAYA+PI RVTLAR +F PGPF+LG+YG VGW++V+WVVTIS+LFSLPV+YPIT
Sbjct: 418 IGLYIAYAIPIILRVTLARNTFVPGPFSLGKYGMVVGWVAVLWVVTISVLFSLPVAYPIT 477
Query: 223 IETFNYTPVAVGCLLLLVISYWIFSGRHWFQGPITNI 113
ET NYTPVAV L+ + +SYW+FS RHWF GPI+NI
Sbjct: 478 AETLNYTPVAVAGLVAITLSYWLFSARHWFTGPISNI 514
>ref|NP_565254.1| amino acid permease family; protein id: At2g01170.1, supported by
cDNA: gi_19347736, supported by cDNA: gi_2444270
[Arabidopsis thaliana] gi|2444271|gb|AAB71542.1|
putative amino acid or GABA permease [Arabidopsis
thaliana] gi|20197592|gb|AAD14517.2| putative amino acid
or GABA permease [Arabidopsis thaliana]
Length = 516
Score = 256 bits (654), Expect = 2e-67
Identities = 119/157 (75%), Positives = 136/157 (85%)
Frame = -3
Query: 583 RMTYAFSRDGAMPLSSLWHKVNKQEVPIYAVWLSTVISFCMALTSLGSTVAFDAMVSIAT 404
RM YAFSRDGAMP+S LWHKVN +EVPI AVWLS +ISFCMALTSLGS VAF AMVSIAT
Sbjct: 358 RMAYAFSRDGAMPMSPLWHKVNSREVPINAVWLSALISFCMALTSLGSIVAFQAMVSIAT 417
Query: 403 IGLYIAYALPIFFRVTLARKSFAPGPFNLGRYGTFVGWISVIWVVTISILFSLPVSYPIT 224
IGLYIAYA+PI RVTLAR +F PGPF+LG+YG VGW++V+WVVTIS+LFSLPV+YPIT
Sbjct: 418 IGLYIAYAIPIILRVTLARNTFVPGPFSLGKYGMVVGWVAVLWVVTISVLFSLPVAYPIT 477
Query: 223 IETFNYTPVAVGCLLLLVISYWIFSGRHWFQGPITNI 113
ET NYTPVAV L+ + +SYW+FS RHWF GPI+NI
Sbjct: 478 AETLNYTPVAVAGLVAITLSYWLFSARHWFTGPISNI 514
>dbj|BAB63860.1| contains EST AU031682(R0503)~similar to GABA permease~unknown
protein [Oryza sativa (japonica cultivar-group)]
gi|19386878|dbj|BAB86255.1| P0614D08.23 [Oryza sativa
(japonica cultivar-group)]
Length = 637
Score = 238 bits (608), Expect = 3e-62
Identities = 112/156 (71%), Positives = 128/156 (81%)
Frame = -3
Query: 583 RMTYAFSRDGAMPLSSLWHKVNKQEVPIYAVWLSTVISFCMALTSLGSTVAFDAMVSIAT 404
RM YAFSRDGAMP S +WH+VNKQEVPI AVWLS V++F MALTSLGS VAF AMVSIAT
Sbjct: 476 RMAYAFSRDGAMPFSKVWHRVNKQEVPINAVWLSVVVAFIMALTSLGSQVAFQAMVSIAT 535
Query: 403 IGLYIAYALPIFFRVTLARKSFAPGPFNLGRYGTFVGWISVIWVVTISILFSLPVSYPIT 224
IGL I+YALPIFFRVT AR SF PGPF+LG+YG VGW +V+WV +++LFSLPV+YP+
Sbjct: 536 IGLCISYALPIFFRVTTARGSFVPGPFHLGKYGIVVGWAAVLWVAAVTVLFSLPVAYPVA 595
Query: 223 IETFNYTPVAVGCLLLLVISYWIFSGRHWFQGPITN 116
ETFNYTPVAVG +LLL + W R WFQGPITN
Sbjct: 596 EETFNYTPVAVGGVLLLTVGAWALRARFWFQGPITN 631
>dbj|BAB63858.1| contains EST D23882(R0503)~similar to GABA permease~unknown protein
[Oryza sativa (japonica cultivar-group)]
gi|19386876|dbj|BAB86253.1| P0614D08.21 [Oryza sativa
(japonica cultivar-group)]
Length = 521
Score = 234 bits (598), Expect = 5e-61
Identities = 108/159 (67%), Positives = 129/159 (80%), Gaps = 1/159 (0%)
Frame = -3
Query: 583 RMTYAFSRDGAMPLSSLWHKVNKQEVPIYAVWLSTVISFCMALTSLGSTVAFDAMVSIAT 404
RM YAFSRDGAMPLS +W++VNK EVP+ VWL ++F MALTSLGS VAF AM SIAT
Sbjct: 360 RMAYAFSRDGAMPLSRVWYRVNKHEVPLNVVWLGVAVAFVMALTSLGSQVAFQAMGSIAT 419
Query: 403 IGLYIAYALPIFFRVTLARKSFAPGPFNLGRYGTFVGWISVIWVVTISILFSLPVSYPI- 227
+G+YIAYALP+FFRVT AR+SF PGPF+LGRYG VGW V+WV T+++LFSLPV+YP+
Sbjct: 420 LGMYIAYALPVFFRVTTARRSFVPGPFHLGRYGVVVGWAGVVWVATVTVLFSLPVAYPVA 479
Query: 226 TIETFNYTPVAVGCLLLLVISYWIFSGRHWFQGPITNID 110
ETFNYTPVAVG +LLL + W+ R WFQGPITN+D
Sbjct: 480 NKETFNYTPVAVGGVLLLSVGAWVLRARFWFQGPITNVD 518
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 571,024,372
Number of Sequences: 1393205
Number of extensions: 13219968
Number of successful extensions: 28891
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 27952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28839
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
