Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003264A_C01 KMC003264A_c01
(668 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200262.1| auxin-responsive-like protein; protein id: At5g... 216 2e-55
gb|AAL47444.1| AT5g54510/F24B18_13 [Arabidopsis thaliana] 213 2e-54
ref|NP_194456.1| GH3 like protein; protein id: At4g27260.1, supp... 213 2e-54
dbj|BAB92590.1| putative auxin-responsive GH3 [Oryza sativa (jap... 175 4e-43
ref|NP_179898.1| unknown protein; protein id: At2g23170.1, suppo... 146 3e-34
>ref|NP_200262.1| auxin-responsive-like protein; protein id: At5g54510.1, supported
by cDNA: gi_11041725, supported by cDNA: gi_17978965
[Arabidopsis thaliana] gi|8885594|dbj|BAA97524.1|
auxin-responsive-like protein [Arabidopsis thaliana]
gi|11041726|dbj|BAB17304.1| auxin-responsive GH3
homologue [Arabidopsis thaliana]
Length = 612
Score = 216 bits (551), Expect = 2e-55
Identities = 100/112 (89%), Positives = 105/112 (93%)
Frame = -3
Query: 666 VLYWELALNGTTQIPPCVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEQGTFDKL 487
VL+WEL LNG T IPP VFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIK+VE GTFDKL
Sbjct: 498 VLFWELCLNGNTPIPPSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKMVESGTFDKL 557
Query: 486 MDYAISLGASINQYKTPRCVKFAPVVELLNSRVMSSYFSPKCPKWVPGHKQW 331
MDYAISLGASINQYKTPRCVKFAP++ELLNSRV+ SYFSPKCPKW PGHKQW
Sbjct: 558 MDYAISLGASINQYKTPRCVKFAPIIELLNSRVVDSYFSPKCPKWSPGHKQW 609
>gb|AAL47444.1| AT5g54510/F24B18_13 [Arabidopsis thaliana]
Length = 612
Score = 213 bits (542), Expect = 2e-54
Identities = 99/112 (88%), Positives = 104/112 (92%)
Frame = -3
Query: 666 VLYWELALNGTTQIPPCVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEQGTFDKL 487
VL+WEL LNG T IPP VFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIK+VE GTFDKL
Sbjct: 498 VLFWELCLNGNTPIPPSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKMVESGTFDKL 557
Query: 486 MDYAISLGASINQYKTPRCVKFAPVVELLNSRVMSSYFSPKCPKWVPGHKQW 331
MDYAISLGASINQYKTPRCVKFAP++ELLNSRV+ SYFSPKCPKW GHKQW
Sbjct: 558 MDYAISLGASINQYKTPRCVKFAPIIELLNSRVVDSYFSPKCPKWSHGHKQW 609
>ref|NP_194456.1| GH3 like protein; protein id: At4g27260.1, supported by cDNA:
gi_17979054, supported by cDNA: gi_20465960 [Arabidopsis
thaliana] gi|7486808|pir||T05750 auxin-regulated protein
GH3 homolog M4I22.70 - Arabidopsis thaliana
gi|3269287|emb|CAA19720.1| GH3 like protein [Arabidopsis
thaliana] gi|7269579|emb|CAB79581.1| GH3 like protein
[Arabidopsis thaliana] gi|17979055|gb|AAL49795.1|
putative GH3 protein [Arabidopsis thaliana]
gi|20465961|gb|AAM20166.1| putative GH3 protein
[Arabidopsis thaliana]
Length = 612
Score = 213 bits (541), Expect = 2e-54
Identities = 97/112 (86%), Positives = 104/112 (92%)
Frame = -3
Query: 666 VLYWELALNGTTQIPPCVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEQGTFDKL 487
VL+WEL L+G T IPP VFEDCCL +EES N+VYRQGRVSDKSIGPLEIKIVE GTFDKL
Sbjct: 498 VLFWELCLDGNTPIPPSVFEDCCLAVEESFNTVYRQGRVSDKSIGPLEIKIVEPGTFDKL 557
Query: 486 MDYAISLGASINQYKTPRCVKFAPVVELLNSRVMSSYFSPKCPKWVPGHKQW 331
MDYAISLGASINQYKTPRCVKFAP++ELLNSRV+ SYFSPKCPKWVPGHKQW
Sbjct: 558 MDYAISLGASINQYKTPRCVKFAPIIELLNSRVVDSYFSPKCPKWVPGHKQW 609
>dbj|BAB92590.1| putative auxin-responsive GH3 [Oryza sativa (japonica
cultivar-group)]
Length = 610
Score = 175 bits (444), Expect = 4e-43
Identities = 80/112 (71%), Positives = 95/112 (84%)
Frame = -3
Query: 666 VLYWELALNGTTQIPPCVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEQGTFDKL 487
VL+WEL G+T +P VFE+CCL++EE+LNSVYRQGR D+SIGPLEI++V +GTFDKL
Sbjct: 488 VLFWELRA-GSTAVPASVFEECCLSVEEALNSVYRQGRACDRSIGPLEIRVVAEGTFDKL 546
Query: 486 MDYAISLGASINQYKTPRCVKFAPVVELLNSRVMSSYFSPKCPKWVPGHKQW 331
MDYAIS GASINQYK PRCV+ PVVELL++RV YFSPKCPKW PG+KQW
Sbjct: 547 MDYAISRGASINQYKAPRCVRPGPVVELLDARVQGKYFSPKCPKWSPGNKQW 598
>ref|NP_179898.1| unknown protein; protein id: At2g23170.1, supported by cDNA:
gi_19699327 [Arabidopsis thaliana]
gi|7487246|pir||T00515 auxin-regulated protein GH3
homolog At2g23170 - Arabidopsis thaliana
gi|2642446|gb|AAB87114.1| unknown protein [Arabidopsis
thaliana] gi|19699328|gb|AAL91274.1| At2g23170/T20D16.20
[Arabidopsis thaliana] gi|23463057|gb|AAN33198.1|
At2g23170/T20D16.20 [Arabidopsis thaliana]
Length = 595
Score = 146 bits (368), Expect = 3e-34
Identities = 70/112 (62%), Positives = 87/112 (77%), Gaps = 1/112 (0%)
Frame = -3
Query: 666 VLYWELALNGTTQIPPC-VFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEQGTFDK 490
V+YWEL + T P V CCL +EESLNSVYRQ RV+DKSIGPLEI++V+ GTF++
Sbjct: 484 VIYWELLVKDQTNPPNDEVMARCCLEMEESLNSVYRQSRVADKSIGPLEIRVVKNGTFEE 543
Query: 489 LMDYAISLGASINQYKTPRCVKFAPVVELLNSRVMSSYFSPKCPKWVPGHKQ 334
LMDYAIS GASINQYK PRCV F P++ELL+SRV+S++FSP P W P ++
Sbjct: 544 LMDYAISRGASINQYKVPRCVSFTPIMELLDSRVVSTHFSPALPHWSPERRR 595
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,780,310
Number of Sequences: 1393205
Number of extensions: 11850804
Number of successful extensions: 29956
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 29279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29941
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
