Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003249A_C01 KMC003249A_c01
(739 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC82326.1| similarity to SCAMP37 [Pisum sativum] 223 3e-57
ref|NP_179680.1| putative secretory carrier-associated membrane ... 207 1e-52
ref|NP_176320.1| secretory carrier membrane protein; protein id:... 203 2e-51
ref|NP_172584.1| secretory carrier membrane protein, putative; p... 202 4e-51
gb|AAF36688.1|AF225922_1 secretory carrier membrane protein [Ory... 200 2e-50
>gb|AAC82326.1| similarity to SCAMP37 [Pisum sativum]
Length = 289
Score = 223 bits (567), Expect = 3e-57
Identities = 104/122 (85%), Positives = 113/122 (92%)
Frame = -1
Query: 721 LAIIYFIAGVPGAYVLWYRPLYRAFRTDSAMKFGWFFLFYLLHLGFCILAAVAPPIVFKG 542
LAIIYFIAGVPGAY LWYRPLYRAFRTDSA+KFGWFF+FYLLH+GFCILAAVAPPIVFKG
Sbjct: 159 LAIIYFIAGVPGAYALWYRPLYRAFRTDSAIKFGWFFMFYLLHIGFCILAAVAPPIVFKG 218
Query: 541 KSLTGILSAIDVIDDHTVIGILYFIGFGLFCLEILVGIWVIQQVGMYFRGSGKAAEMKRE 362
KSLTGILSAIDV+ D+T++GI YFIGFG FCLE L+ IWVIQQV M+FRG GK AEMKRE
Sbjct: 219 KSLTGILSAIDVVGDYTLVGIFYFIGFGFFCLETLISIWVIQQVYMHFRGGGKTAEMKRE 278
Query: 361 AA 356
AA
Sbjct: 279 AA 280
>ref|NP_179680.1| putative secretory carrier-associated membrane protein; protein id:
At2g20840.1 [Arabidopsis thaliana]
gi|25411996|pir||A84594 hypothetical protein At2g20840
[imported] - Arabidopsis thaliana
gi|4454464|gb|AAD20911.1| putative secretory
carrier-associated membrane protein [Arabidopsis
thaliana]
Length = 282
Score = 207 bits (528), Expect = 1e-52
Identities = 96/124 (77%), Positives = 108/124 (86%)
Frame = -1
Query: 721 LAIIYFIAGVPGAYVLWYRPLYRAFRTDSAMKFGWFFLFYLLHLGFCILAAVAPPIVFKG 542
LAIIYFI+GVPGAYV+WYRPLYRA RTDSA+KFGWFF YL H+ FC+ AAVAPPI+FKG
Sbjct: 153 LAIIYFISGVPGAYVMWYRPLYRAMRTDSALKFGWFFFTYLFHIAFCVFAAVAPPIIFKG 212
Query: 541 KSLTGILSAIDVIDDHTVIGILYFIGFGLFCLEILVGIWVIQQVGMYFRGSGKAAEMKRE 362
KSLTGIL AIDV+ + ++GI YFIGFG FCLE LV IWVIQQV MYFRGSGKAAEMK+E
Sbjct: 213 KSLTGILPAIDVLSGNILVGIFYFIGFGFFCLESLVSIWVIQQVYMYFRGSGKAAEMKQE 272
Query: 361 AAKR 350
A +R
Sbjct: 273 ATRR 276
>ref|NP_176320.1| secretory carrier membrane protein; protein id: At1g61250.1,
supported by cDNA: 27197., supported by cDNA:
gi_15027862, supported by cDNA: gi_19310672, supported
by cDNA: gi_7109227 [Arabidopsis thaliana]
gi|7109228|gb|AAF36686.1|AF225920_1 secretory carrier
membrane protein [Arabidopsis thaliana]
gi|15027863|gb|AAK76462.1| putative secretory carrier
membrane protein [Arabidopsis thaliana]
gi|19310673|gb|AAL85067.1| putative secretory carrier
membrane protein [Arabidopsis thaliana]
gi|21555163|gb|AAM63793.1| secretory carrier membrane
protein [Arabidopsis thaliana]
Length = 289
Score = 203 bits (517), Expect = 2e-51
Identities = 92/124 (74%), Positives = 106/124 (85%)
Frame = -1
Query: 724 VLAIIYFIAGVPGAYVLWYRPLYRAFRTDSAMKFGWFFLFYLLHLGFCILAAVAPPIVFK 545
+LA+IYFIAGVPG YVLWYRPLYRAFRTDSA+ FGWFFLFY+LH+ FC+ AAVAPP+VFK
Sbjct: 159 LLALIYFIAGVPGGYVLWYRPLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFK 218
Query: 544 GKSLTGILSAIDVIDDHTVIGILYFIGFGLFCLEILVGIWVIQQVGMYFRGSGKAAEMKR 365
GKSL GIL AIDV+ ++GI YFIGF FCLE +V IWVIQQV MYFRGSGK +M+R
Sbjct: 219 GKSLAGILPAIDVLSGQAIVGIFYFIGFAFFCLESVVSIWVIQQVYMYFRGSGKQDQMRR 278
Query: 364 EAAK 353
EAA+
Sbjct: 279 EAAR 282
>ref|NP_172584.1| secretory carrier membrane protein, putative; protein id:
At1g11180.1 [Arabidopsis thaliana]
Length = 291
Score = 202 bits (514), Expect = 4e-51
Identities = 93/124 (75%), Positives = 108/124 (87%)
Frame = -1
Query: 724 VLAIIYFIAGVPGAYVLWYRPLYRAFRTDSAMKFGWFFLFYLLHLGFCILAAVAPPIVFK 545
+LA+IYFI+GVPG YVLWYRPLYRAFR+DSA FGWFFLFY+LH+ FC+ AAVAPPIVFK
Sbjct: 161 LLAVIYFISGVPGGYVLWYRPLYRAFRSDSAFNFGWFFLFYMLHILFCLFAAVAPPIVFK 220
Query: 544 GKSLTGILSAIDVIDDHTVIGILYFIGFGLFCLEILVGIWVIQQVGMYFRGSGKAAEMKR 365
GKSL GIL AIDV+ ++GI YFIGFGLFCLE +V IWVIQQV MYFRGSGKA +M+R
Sbjct: 221 GKSLAGILPAIDVLSAQALVGIFYFIGFGLFCLESVVSIWVIQQVYMYFRGSGKADDMRR 280
Query: 364 EAAK 353
+AA+
Sbjct: 281 DAAR 284
>gb|AAF36688.1|AF225922_1 secretory carrier membrane protein [Oryza sativa]
gi|15289879|dbj|BAB63575.1| secretory carrier membrane
protein [Oryza sativa (japonica cultivar-group)]
Length = 286
Score = 200 bits (509), Expect = 2e-50
Identities = 95/124 (76%), Positives = 109/124 (87%)
Frame = -1
Query: 724 VLAIIYFIAGVPGAYVLWYRPLYRAFRTDSAMKFGWFFLFYLLHLGFCILAAVAPPIVFK 545
+LAIIYFI+GVPGAYVLWYRPLY A RT+SA+KFGWFFLFYL+H+ FCI +AVAPP FK
Sbjct: 156 LLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHILFCIWSAVAPPFPFK 215
Query: 544 GKSLTGILSAIDVIDDHTVIGILYFIGFGLFCLEILVGIWVIQQVGMYFRGSGKAAEMKR 365
GKSL GIL AIDVI ++ ++GI YFIGFGLFCLE L+ + VIQQV MYFRGSGKAAEMKR
Sbjct: 216 GKSLAGILPAIDVIGNNAIVGIFYFIGFGLFCLESLLSVVVIQQVYMYFRGSGKAAEMKR 275
Query: 364 EAAK 353
EAA+
Sbjct: 276 EAAR 279
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 614,554,570
Number of Sequences: 1393205
Number of extensions: 13378182
Number of successful extensions: 29990
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 28955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29902
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35188080875
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
