Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003247A_C01 KMC003247A_c01
(618 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_542614.1| hypothetical protein [Grapevine fleck virus] gi... 41 0.014
ref|NP_639720.1| putative integral membrane protein [Streptomyce... 39 0.070
ref|NP_690573.1| Orf154 [Heliothis zea virus 1] gi|22671619|gb|A... 38 0.092
gb|AAF04915.1|AF011555_1 jasmonic acid 2 [Lycopersicon esculentum] 38 0.092
pir||T18535 high molecular mass nuclear antigen - chicken (fragm... 38 0.092
>ref|NP_542614.1| hypothetical protein [Grapevine fleck virus]
gi|18073604|emb|CAC84402.1| hypothetical protein
[Grapevine fleck virus]
Length = 309
Score = 40.8 bits (94), Expect = 0.014
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Frame = +3
Query: 330 QPDGSSHRSEPLPPPCS*LLRTSPRGRTAAQKGHKGHCN--CNSPSTEPGSPEQTRALCP 503
+P S+ S PLPPP LR+SP A +G +SP + P S +R P
Sbjct: 51 RPSTSAGPSTPLPPPA---LRSSPSSALNASRGAPSTSPPPSSSPPSSPASTPPSRTPSP 107
Query: 504 DPSGYPSP*KSRWQNPTSR--PAAASGASSRAAAQST 608
P+ SP S P S P S A S +AA S+
Sbjct: 108 TPTAPASPVASTAMTPASPSVPPPPSAAPSSSAALSS 144
>ref|NP_639720.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
gi|13620629|emb|CAC36668.1| putative integral membrane
protein [Streptomyces coelicolor A3(2)]
Length = 772
Score = 38.5 bits (88), Expect = 0.070
Identities = 31/116 (26%), Positives = 48/116 (40%), Gaps = 1/116 (0%)
Frame = +3
Query: 267 NRAIIAAWSNPDSADKTRNSQQPDGSSHRSEPLPPPCS*LLRTSPRGRTAAQKGHKGHCN 446
N A A++ P S T + G+S R P P + P GR+ +
Sbjct: 589 NPATALAYTMPRSVGATALITRLGGTSRRGGTAPRPGA----ARPAGRSGPPIPPQQVPP 644
Query: 447 CNSPSTEPGSPEQTRALCPDPSGYPSP*KSRWQNPTSRPAAASGAS-SRAAAQSTG 611
+ + PG+P+ A+ P PS P P ++ P RP+ G+ +R A TG
Sbjct: 645 ASPATPTPGTPQHPNAVPPQPSSSPRPARTPRPAPPPRPSHRPGSQPARRAGNRTG 700
>ref|NP_690573.1| Orf154 [Heliothis zea virus 1]
gi|22671619|gb|AAN04446.1|AF451898_153 Orf154 [Heliothis
zea virus 1]
Length = 1505
Score = 38.1 bits (87), Expect = 0.092
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Frame = +3
Query: 210 PETEPSLLTQIPEPKRVQQNRAIIAAWSNPDSADKTRNSQQPDG--SSHRSEPLPPPCS* 383
P ++P +++ P P + ++ S P+S K S +P +S ++P P P S
Sbjct: 580 PASKPDSVSKQPTPSKPTSSKPTSKPASKPESVSKQPTSSKPTSKPTSTLTKPTPKPTST 639
Query: 384 LLRTSPRGRTAAQKGHKGHCNCNSPSTEPGSPEQTRALCPDPSGYPSP*KSRWQNPT--- 554
L T P + + PS +P + + P S+ PT
Sbjct: 640 L--TKPTSKPTKPDSVSKQPTSSKPSEKPSDKTTNTTTTTNTTPVSKPTLSK-PTPTTTS 696
Query: 555 -SRPAAASGASSRAAAQST 608
S+PA +S ++S + ++ST
Sbjct: 697 SSKPAPSSNSTSNSTSKST 715
Score = 34.7 bits (78), Expect = 1.0
Identities = 28/104 (26%), Positives = 40/104 (37%), Gaps = 1/104 (0%)
Frame = +3
Query: 297 PDSADKTRNSQQPDGSSHRSEPLPPPCS*LLRTSPRGRTAAQKGHKGHCNCNSPSTEPGS 476
P + NS S H S+P P P S +P+ + + K N +
Sbjct: 517 PTAKPAEANSASKTASKHVSKPTPKPAS-TSNPTPKPVSTSNPTPKPGSTSNPTPKPAST 575
Query: 477 PEQTRALCPDP-SGYPSP*KSRWQNPTSRPAAASGASSRAAAQS 605
P A PD S P+P K PTS+PA+ + S+ S
Sbjct: 576 PTPKPASKPDSVSKQPTPSKPTSSKPTSKPASKPESVSKQPTSS 619
>gb|AAF04915.1|AF011555_1 jasmonic acid 2 [Lycopersicon esculentum]
Length = 349
Score = 38.1 bits (87), Expect = 0.092
Identities = 37/122 (30%), Positives = 54/122 (43%), Gaps = 18/122 (14%)
Frame = -1
Query: 618 IDDRCFALPRVNSLRTLQQD-EKLGSATGIFTDWGNPTDLDTVPEF-----VPGSQAQWM 457
+DDR LPR+NSL+ + + ++L SA DW L +PE PG Q Q
Sbjct: 203 MDDRFSNLPRLNSLKAEKFNLDRLDSAN---FDWAILAGLKPMPELGPANQAPGVQGQAQ 259
Query: 456 GNYS------------CNDLYVPSVPQFGHVDWSATTRNTAEEEVQSGVRTHRVAESSGF 313
G+ + ND+Y G+ + +EEV+SG R R+ +SS F
Sbjct: 260 GHVNNHIHSDNNNMNFLNDVYAHPPNFRGNTKVESIN---LDEEVESGKRNQRIDQSSYF 316
Query: 312 YQ 307
Q
Sbjct: 317 QQ 318
>pir||T18535 high molecular mass nuclear antigen - chicken (fragment)
gi|2754696|dbj|BAA24137.1| high molecular mass nuclear
antigen [Gallus gallus]
Length = 1151
Score = 38.1 bits (87), Expect = 0.092
Identities = 26/106 (24%), Positives = 39/106 (36%)
Frame = +3
Query: 282 AAWSNPDSADKTRNSQQPDGSSHRSEPLPPPCS*LLRTSPRGRTAAQKGHKGHCNCNSPS 461
A + P T +Q P ++ + P + ++ P G T Q G +P
Sbjct: 853 AVTTQPPPMAATNTTQPPPMAASTPQSTPMGAATTTQSPPMGATTTQSPPMGASTPQAPP 912
Query: 462 TEPGSPEQTRALCPDPSGYPSP*KSRWQNPTSRPAAASGASSRAAA 599
T GSP + P P+ SP P P A S A+ + A
Sbjct: 913 TVAGSPTPPPPIPPSPTAQTSPQPMSKSPPPDPPKAPSAAAQTSPA 958
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 582,545,936
Number of Sequences: 1393205
Number of extensions: 14628661
Number of successful extensions: 47199
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 43477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46782
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
