Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003245A_C01 KMC003245A_c01
(469 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192260.1| E3 ubiquitin ligase, RMA1; protein id: At4g0351... 73 2e-12
gb|AAN05420.1| putative RING protein [Populus x canescens] 67 7e-11
ref|NP_194556.1| putative protein; protein id: At4g28270.1 [Arab... 54 6e-07
gb|AAO00789.1| putative RING zinc finger protein [Arabidopsis th... 49 3e-05
gb|AAG02256.1| mucin [Mus musculus] 33 1.9
>ref|NP_192260.1| E3 ubiquitin ligase, RMA1; protein id: At4g03510.1, supported by
cDNA: gi_3164221 [Arabidopsis thaliana]
gi|25354184|pir||T52142 RING finger protein RMA1
[validated] - Arabidopsis thaliana
gi|3164222|dbj|BAA28598.1| RMA1 [Arabidopsis thaliana]
gi|4206205|gb|AAD11593.1|AAD11593 RMA1 RING zinc finger
protein [Arabidopsis thaliana]
gi|7270674|emb|CAB77836.1| RMA1 RING zinc finger protein
[Arabidopsis thaliana] gi|28392896|gb|AAO41884.1|
putative E3 ubiquitin ligase, RMA1 [Arabidopsis
thaliana] gi|28827754|gb|AAO50721.1| putative E3
ubiquitin ligase, RMA1 [Arabidopsis thaliana]
Length = 249
Score = 72.8 bits (177), Expect = 2e-12
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Frame = -2
Query: 441 SSYSTSPMFSTSGSLDNTFGIFGEMMYATVFGNQVSNMYSY----NQPGSSNPRIRRHLM 274
S +S S S LD + GEM+ +FG +V + ++Y N G+S PR+RR +M
Sbjct: 166 SGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIM 225
Query: 273 RVDKSLSRICFFLFCCMVLCLLLF 202
+ DKSL RI FF CC+VLCLLLF
Sbjct: 226 QADKSLGRIFFFFMCCVVLCLLLF 249
>gb|AAN05420.1| putative RING protein [Populus x canescens]
Length = 233
Score = 67.4 bits (163), Expect = 7e-11
Identities = 32/61 (52%), Positives = 44/61 (71%)
Frame = -2
Query: 384 GIFGEMMYATVFGNQVSNMYSYNQPGSSNPRIRRHLMRVDKSLSRICFFLFCCMVLCLLL 205
G+F EM+YA VFG + SY+ G+ +PR+RRH + DKSL+RI FLFCC +LCL++
Sbjct: 176 GMFREMVYARVFGPFPN---SYHLMGTGSPRLRRHELMADKSLNRISIFLFCCFLLCLIV 232
Query: 204 F 202
F
Sbjct: 233 F 233
>ref|NP_194556.1| putative protein; protein id: At4g28270.1 [Arabidopsis thaliana]
gi|7486197|pir||T09043 hypothetical protein F26K10.150 -
Arabidopsis thaliana gi|1773040|gb|AAC49830.1| RING zinc
finger protein [Arabidopsis thaliana]
gi|7269681|emb|CAB79629.1| putative protein [Arabidopsis
thaliana] gi|27764994|gb|AAO23618.1| At4g28270
[Arabidopsis thaliana]
Length = 193
Score = 54.3 bits (129), Expect = 6e-07
Identities = 28/65 (43%), Positives = 36/65 (55%)
Frame = -2
Query: 396 DNTFGIFGEMMYATVFGNQVSNMYSYNQPGSSNPRIRRHLMRVDKSLSRICFFLFCCMVL 217
D G+ EM+Y +FG SNM Y N R RR M+ ++SLSR+ FL C M +
Sbjct: 132 DPVMGVVCEMVYRRLFGESSSNMAPYRD---MNVRSRRRAMQAEESLSRVYLFLLCFMFM 188
Query: 216 CLLLF 202
CL LF
Sbjct: 189 CLFLF 193
>gb|AAO00789.1| putative RING zinc finger protein [Arabidopsis thaliana]
Length = 243
Score = 48.9 bits (115), Expect = 3e-05
Identities = 21/61 (34%), Positives = 37/61 (60%)
Frame = -2
Query: 384 GIFGEMMYATVFGNQVSNMYSYNQPGSSNPRIRRHLMRVDKSLSRICFFLFCCMVLCLLL 205
G+FG+++Y +FG + + + P + +M+ +KSL+R+ F CC++LCLLL
Sbjct: 191 GMFGDLVYTRIFGTFTNTI--------AQPYQSQRMMQREKSLNRVSIFFLCCIILCLLL 242
Query: 204 F 202
F
Sbjct: 243 F 243
>gb|AAG02256.1| mucin [Mus musculus]
Length = 232
Score = 32.7 bits (73), Expect = 1.9
Identities = 31/92 (33%), Positives = 39/92 (41%)
Frame = +3
Query: 108 HLQLPWLEYMYQYT*CTLYNDLLLLNETVAVRTREDTTPCSRRGKNRSC*VIYQPSLDAF 287
H ++PWL LY+ LLLL E A+ T TP S R+ + Q S +
Sbjct: 5 HWRVPWLCLS------CLYSCLLLLPED-ALATTSTQTPVSLSSSTRTSQMSSQASTSST 57
Query: 288 *SSDYCSLVGYTSTCLTPGSQTPLHTSSHQRS 383
S S TST TP S T + S H S
Sbjct: 58 SSDRRTSKTEQTSTRDTPSSITTVSQSHHTTS 89
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,930,726
Number of Sequences: 1393205
Number of extensions: 8029461
Number of successful extensions: 20743
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20725
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
