Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003243A_C01 KMC003243A_c01
(729 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61355.1| 3-dehydroquinate synthase-like protein [Arabidops... 190 2e-47
ref|NP_569029.1| 3-dehydroquinate synthase, putative; protein id... 190 2e-47
dbj|BAB10417.1| 3-dehydroquinate synthase-like protein [Arabidop... 190 2e-47
gb|AAL77575.1|L46847_1 dehydroquinate synthase [Lycopersicon esc... 188 6e-47
ref|NP_253725.1| 3-dehydroquinate synthase [Pseudomonas aerugino... 115 5e-25
>gb|AAM61355.1| 3-dehydroquinate synthase-like protein [Arabidopsis thaliana]
Length = 442
Score = 190 bits (483), Expect = 2e-47
Identities = 91/111 (81%), Positives = 101/111 (90%)
Frame = -2
Query: 728 IETGVGYGQWLHGEAVAAGTVMAADMSYRLGWIDDSIVRRVRDILIQAKLPIAPPETMTV 549
IETG GYG+WLHGEAVAAGTVMA DMSYRLGWID+SIV+RV IL++AKLP PPE+MTV
Sbjct: 332 IETGFGYGEWLHGEAVAAGTVMAVDMSYRLGWIDESIVKRVNKILVRAKLPTTPPESMTV 391
Query: 548 DIFKNVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLNAFCKS 396
+FK++MAVDKKVADGLLRLILLKGPLGNCVFTGDYDR+ALD TL AF KS
Sbjct: 392 SMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDREALDATLRAFSKS 442
>ref|NP_569029.1| 3-dehydroquinate synthase, putative; protein id: At5g66120.1,
supported by cDNA: 117923., supported by cDNA:
gi_17978955 [Arabidopsis thaliana]
gi|17978956|gb|AAL47443.1| AT5g66120/K2A18_20
[Arabidopsis thaliana] gi|22655384|gb|AAM98284.1|
At5g66120/K2A18_20 [Arabidopsis thaliana]
Length = 442
Score = 190 bits (483), Expect = 2e-47
Identities = 91/111 (81%), Positives = 101/111 (90%)
Frame = -2
Query: 728 IETGVGYGQWLHGEAVAAGTVMAADMSYRLGWIDDSIVRRVRDILIQAKLPIAPPETMTV 549
IETG GYG+WLHGEAVAAGTVMA DMSYRLGWID+SIV+RV IL++AKLP PPE+MTV
Sbjct: 332 IETGFGYGEWLHGEAVAAGTVMAVDMSYRLGWIDESIVKRVNKILVRAKLPTTPPESMTV 391
Query: 548 DIFKNVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLNAFCKS 396
+FK++MAVDKKVADGLLRLILLKGPLGNCVFTGDYDR+ALD TL AF KS
Sbjct: 392 SMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDREALDATLRAFSKS 442
>dbj|BAB10417.1| 3-dehydroquinate synthase-like protein [Arabidopsis thaliana]
Length = 378
Score = 190 bits (483), Expect = 2e-47
Identities = 91/111 (81%), Positives = 101/111 (90%)
Frame = -2
Query: 728 IETGVGYGQWLHGEAVAAGTVMAADMSYRLGWIDDSIVRRVRDILIQAKLPIAPPETMTV 549
IETG GYG+WLHGEAVAAGTVMA DMSYRLGWID+SIV+RV IL++AKLP PPE+MTV
Sbjct: 268 IETGFGYGEWLHGEAVAAGTVMAVDMSYRLGWIDESIVKRVNKILVRAKLPTTPPESMTV 327
Query: 548 DIFKNVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLNAFCKS 396
+FK++MAVDKKVADGLLRLILLKGPLGNCVFTGDYDR+ALD TL AF KS
Sbjct: 328 SMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDREALDATLRAFSKS 378
>gb|AAL77575.1|L46847_1 dehydroquinate synthase [Lycopersicon esculentum]
Length = 442
Score = 188 bits (478), Expect = 6e-47
Identities = 91/111 (81%), Positives = 102/111 (90%)
Frame = -2
Query: 728 IETGVGYGQWLHGEAVAAGTVMAADMSYRLGWIDDSIVRRVRDILIQAKLPIAPPETMTV 549
+ETGVGYGQWLHGEAVAAGTVMA DMS RLGWIDDS+V+RV+ IL QAKLP +PPETMTV
Sbjct: 332 VETGVGYGQWLHGEAVAAGTVMAVDMSRRLGWIDDSLVQRVQKILQQAKLPTSPPETMTV 391
Query: 548 DIFKNVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLNAFCKS 396
++FK++MAVDKKVADG LRLILLKG LGNCVFTGDYD+KALD+TL AF KS
Sbjct: 392 EMFKSIMAVDKKVADGKLRLILLKGSLGNCVFTGDYDQKALDETLRAFSKS 442
>ref|NP_253725.1| 3-dehydroquinate synthase [Pseudomonas aeruginosa PA01]
gi|12230881|sp|P34002|AROB_PSEAE 3-dehydroquinate
synthase gi|11347279|pir||G83015 3-dehydroquinate
synthase PA5038 [imported] - Pseudomonas aeruginosa
(strain PAO1) gi|9951328|gb|AAG08423.1|AE004917_2
3-dehydroquinate synthase [Pseudomonas aeruginosa PAO1]
Length = 368
Score = 115 bits (289), Expect = 5e-25
Identities = 62/105 (59%), Positives = 74/105 (70%)
Frame = -2
Query: 728 IETGVGYGQWLHGEAVAAGTVMAADMSYRLGWIDDSIVRRVRDILIQAKLPIAPPETMTV 549
IET GYG WLHGEAV AGTVMA +MS+RLGW+ + R +L +A LP+ PP MT
Sbjct: 251 IETQQGYGVWLHGEAVGAGTVMALEMSHRLGWLSAAERDRGIRLLRRAGLPVVPPAEMTA 310
Query: 548 DIFKNVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTL 414
+ F MAVDKKV DG LRL+LL+G LGN V TGD+ R+ LD TL
Sbjct: 311 EDFMEHMAVDKKVLDGRLRLVLLQG-LGNAVVTGDFPREILDATL 354
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 613,746,284
Number of Sequences: 1393205
Number of extensions: 12900575
Number of successful extensions: 29053
Number of sequences better than 10.0: 124
Number of HSP's better than 10.0 without gapping: 28164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29033
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34343566934
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
