Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003241A_C01 KMC003241A_c01
(487 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61549.1| unknown [Arabidopsis thaliana] 33 2.2
ref|NP_568042.1| putative protein; protein id: At4g38480.1, supp... 33 2.2
pir||T05676 hypothetical protein F20M13.40 - Arabidopsis thalian... 33 2.2
ref|NP_564324.1| expressed protein; protein id: At1g29220.1, sup... 33 2.2
dbj|BAA78572.1| Dof zinc finger protein [Oryza sativa] 32 3.7
>gb|AAM61549.1| unknown [Arabidopsis thaliana]
Length = 471
Score = 32.7 bits (73), Expect = 2.2
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 478 DLPDRTPSGTVQVLTPSNHANTPQFSEPMKFDTMNIDAVIRTDDAELGEADQDEPKS 308
D+ TP GT + L+P N F P FD +D +DD E+ D+ S
Sbjct: 375 DIKIWTPGGTEKPLSPGNAKQASGFGNPRWFDGYYVDDDDDSDDESSEESSDDDDSS 431
>ref|NP_568042.1| putative protein; protein id: At4g38480.1, supported by cDNA:
123721. [Arabidopsis thaliana]
Length = 471
Score = 32.7 bits (73), Expect = 2.2
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 478 DLPDRTPSGTVQVLTPSNHANTPQFSEPMKFDTMNIDAVIRTDDAELGEADQDEPKS 308
D+ TP GT + L+P N F P FD +D +DD E+ D+ S
Sbjct: 375 DIKIWTPGGTEKPLSPGNAKQASGFGNPRWFDGYYVDDDDDSDDESSEESSDDDDSS 431
>pir||T05676 hypothetical protein F20M13.40 - Arabidopsis thaliana
gi|4467135|emb|CAB37504.1| putative protein [Arabidopsis
thaliana] gi|7270831|emb|CAB80512.1| putative protein
[Arabidopsis thaliana]
Length = 426
Score = 32.7 bits (73), Expect = 2.2
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 478 DLPDRTPSGTVQVLTPSNHANTPQFSEPMKFDTMNIDAVIRTDDAELGEADQDEPKS 308
D+ TP GT + L+P N F P FD +D +DD E+ D+ S
Sbjct: 330 DIKIWTPGGTEKPLSPGNAKQASGFGNPRWFDGYYVDDDDDSDDESSEESSDDDDSS 386
>ref|NP_564324.1| expressed protein; protein id: At1g29220.1, supported by cDNA:
20945. [Arabidopsis thaliana] gi|25518656|pir||F86414
hypothetical protein F28N24.10 [imported] - Arabidopsis
thaliana gi|9502418|gb|AAF88117.1|AC021043_10
Hypothetical protein [Arabidopsis thaliana]
Length = 351
Score = 32.7 bits (73), Expect = 2.2
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = -1
Query: 349 DAELGEADQDEPKSGDPLDYFLPPPPKARCSEE 251
D E G+ D S LD FLPP P+ RCSEE
Sbjct: 113 DGERGD-DASGESSDTLLDQFLPPRPRERCSEE 144
>dbj|BAA78572.1| Dof zinc finger protein [Oryza sativa]
Length = 378
Score = 32.0 bits (71), Expect = 3.7
Identities = 18/43 (41%), Positives = 26/43 (59%)
Frame = +3
Query: 252 SSEHLALGGGGRK*SNGSPDFGSS*SASPSSASSVLITASMFM 380
S ++ +GGG RK S S+ AS S+A+SV+ +ASM M
Sbjct: 117 SLRNVPVGGGSRKNKRSSSSAASASPASASTANSVVTSASMSM 159
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,986,186
Number of Sequences: 1393205
Number of extensions: 8874460
Number of successful extensions: 27453
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 26292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27418
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
