Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003222A_C01 KMC003222A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB08605.1| contains similarity to limonene cyclase~gene_id:... 201 6e-51
ref|NP_196000.1| putative protein; protein id: At5g03800.1 [Arab... 201 6e-51
ref|NP_187419.1| Exostosin family; protein id: At3g07620.1 [Arab... 176 1e-43
ref|NP_197913.1| Exostosin family; protein id: At5g25310.1 [Arab... 175 4e-43
ref|NP_196674.1| Exostosin family; protein id: At5g11130.1 [Arab... 172 3e-42
>dbj|BAB08605.1| contains similarity to limonene cyclase~gene_id:MED24.9
[Arabidopsis thaliana]
Length = 408
Score = 201 bits (510), Expect = 6e-51
Identities = 89/128 (69%), Positives = 111/128 (86%)
Frame = -3
Query: 532 LPKAVSYYDMLRKSKFCLCPSGYEVASPRLVEAIYTGCVPVLISEHYVPPFSDVLNWKSF 353
LP+ SY DM+R SKFC+CPSGYEVASPR+VEA+Y+GCVPVLI+ YVPPFSDVLNW+SF
Sbjct: 280 LPRGTSYSDMMRNSKFCICPSGYEVASPRIVEALYSGCVPVLINSGYVPPFSDVLNWRSF 339
Query: 352 SLEVSVKDIPRLKEILLSVNTRQYIRMQRRVGHIRRHFEIHSPPKRFDVFHMVLHSVWLR 173
S+ VSV+DIP LK IL S++ RQY+RM RRV +RRHFE++SP KRFDVFHM+LHS+W+R
Sbjct: 340 SVIVSVEDIPNLKTILTSISPRQYLRMYRRVLKVRRHFEVNSPAKRFDVFHMILHSIWVR 399
Query: 172 RLNFRVHD 149
RLN ++ +
Sbjct: 400 RLNVKIRE 407
>ref|NP_196000.1| putative protein; protein id: At5g03800.1 [Arabidopsis thaliana]
Length = 1388
Score = 201 bits (510), Expect = 6e-51
Identities = 89/128 (69%), Positives = 111/128 (86%)
Frame = -3
Query: 532 LPKAVSYYDMLRKSKFCLCPSGYEVASPRLVEAIYTGCVPVLISEHYVPPFSDVLNWKSF 353
LP+ SY DM+R SKFC+CPSGYEVASPR+VEA+Y+GCVPVLI+ YVPPFSDVLNW+SF
Sbjct: 1260 LPRGTSYSDMMRNSKFCICPSGYEVASPRIVEALYSGCVPVLINSGYVPPFSDVLNWRSF 1319
Query: 352 SLEVSVKDIPRLKEILLSVNTRQYIRMQRRVGHIRRHFEIHSPPKRFDVFHMVLHSVWLR 173
S+ VSV+DIP LK IL S++ RQY+RM RRV +RRHFE++SP KRFDVFHM+LHS+W+R
Sbjct: 1320 SVIVSVEDIPNLKTILTSISPRQYLRMYRRVLKVRRHFEVNSPAKRFDVFHMILHSIWVR 1379
Query: 172 RLNFRVHD 149
RLN ++ +
Sbjct: 1380 RLNVKIRE 1387
>ref|NP_187419.1| Exostosin family; protein id: At3g07620.1 [Arabidopsis thaliana]
gi|6466945|gb|AAF13080.1|AC009176_7 hypothetical protein
[Arabidopsis thaliana]
Length = 470
Score = 176 bits (447), Expect = 1e-43
Identities = 76/129 (58%), Positives = 105/129 (80%)
Frame = -3
Query: 541 YSSLPKAVSYYDMLRKSKFCLCPSGYEVASPRLVEAIYTGCVPVLISEHYVPPFSDVLNW 362
Y +LP + Y +M+RKS+FC+CPSG+EVASPR+ EAIY+GCVPVLISE+YV PFSDVLNW
Sbjct: 341 YENLPDGLDYTEMMRKSRFCICPSGHEVASPRVPEAIYSGCVPVLISENYVLPFSDVLNW 400
Query: 361 KSFSLEVSVKDIPRLKEILLSVNTRQYIRMQRRVGHIRRHFEIHSPPKRFDVFHMVLHSV 182
+ FS+ VSVK+IP LK IL+ + +Y+R+ V ++RH ++ PPKR+DVF+M++HS+
Sbjct: 401 EKFSVSVSVKEIPELKRILMDIPEERYMRLYEGVKKVKRHILVNDPPKRYDVFNMIIHSI 460
Query: 181 WLRRLNFRV 155
WLRRLN ++
Sbjct: 461 WLRRLNVKL 469
>ref|NP_197913.1| Exostosin family; protein id: At5g25310.1 [Arabidopsis thaliana]
Length = 334
Score = 175 bits (443), Expect = 4e-43
Identities = 73/129 (56%), Positives = 105/129 (80%)
Frame = -3
Query: 541 YSSLPKAVSYYDMLRKSKFCLCPSGYEVASPRLVEAIYTGCVPVLISEHYVPPFSDVLNW 362
Y LPK ++YYD +R SKFC CPSGYEVASPR++EAIY+ C+PV++S ++V PF+DVL W
Sbjct: 205 YEYLPKHLNYYDFMRSSKFCFCPSGYEVASPRVIEAIYSECIPVILSVNFVLPFTDVLRW 264
Query: 361 KSFSLEVSVKDIPRLKEILLSVNTRQYIRMQRRVGHIRRHFEIHSPPKRFDVFHMVLHSV 182
++FS+ V V +IPRLKEIL+S++ +Y ++ + ++RRHFE++ PP+RFD FH+ LHS+
Sbjct: 265 ETFSVLVDVSEIPRLKEILMSISNEKYEWLKSNLRYVRRHFELNDPPQRFDAFHLTLHSI 324
Query: 181 WLRRLNFRV 155
WLRRLN ++
Sbjct: 325 WLRRLNLKL 333
>ref|NP_196674.1| Exostosin family; protein id: At5g11130.1 [Arabidopsis thaliana]
gi|8953375|emb|CAB96648.1| putative protein [Arabidopsis
thaliana]
Length = 336
Score = 172 bits (435), Expect = 3e-42
Identities = 71/129 (55%), Positives = 105/129 (81%)
Frame = -3
Query: 541 YSSLPKAVSYYDMLRKSKFCLCPSGYEVASPRLVEAIYTGCVPVLISEHYVPPFSDVLNW 362
Y +LPK ++Y M+ K+KFCLCPSG+EVASPR+VE++Y+GCVPV+I+++YV PFSDVLNW
Sbjct: 204 YENLPKTMNYTKMMDKAKFCLCPSGWEVASPRIVESLYSGCVPVIIADYYVLPFSDVLNW 263
Query: 361 KSFSLEVSVKDIPRLKEILLSVNTRQYIRMQRRVGHIRRHFEIHSPPKRFDVFHMVLHSV 182
K+FS+ + + +P +K+IL ++ +Y+ MQRRV +R+HF I+ P K +D+ HM++HS+
Sbjct: 264 KTFSVHIPISKMPDIKKILEAITEEEYLNMQRRVLEVRKHFVINRPSKPYDMLHMIMHSI 323
Query: 181 WLRRLNFRV 155
WLRRLN R+
Sbjct: 324 WLRRLNVRI 332
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,694,922
Number of Sequences: 1393205
Number of extensions: 10495991
Number of successful extensions: 28423
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 27003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28401
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
