Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003218A_C01 KMC003218A_c01
(840 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_126447.1| hypothetical protein [Pyrococcus abyssi] gi|744... 39 0.073
ref|NP_244338.1| ABC transporter (ATP-binding protein) [Bacillus... 39 0.095
gb|ZP_00059410.1| hypothetical protein [Thermobifida fusca] 39 0.12
ref|NP_579016.1| putative ABC transporter (ATP-binding protein) ... 38 0.16
pir||T44565 probable ATP-dependent transport protein [imported] ... 38 0.16
>ref|NP_126447.1| hypothetical protein [Pyrococcus abyssi] gi|7445574|pir||E75120
hypothetical protein PAB1855 - Pyrococcus abyssi (strain
Orsay) gi|5458189|emb|CAB49678.1| ABC transporter,
ATPase subunit [Pyrococcus abyssi]
Length = 247
Score = 39.3 bits (90), Expect = 0.073
Identities = 15/27 (55%), Positives = 23/27 (84%)
Frame = -1
Query: 825 RVHVLEEGKITRSGGMEIVESIEADGF 745
+VHV+++GKI +SGG EI++ IE +GF
Sbjct: 211 KVHVMKDGKIVKSGGSEIIDMIEREGF 237
>ref|NP_244338.1| ABC transporter (ATP-binding protein) [Bacillus halodurans]
gi|25384146|pir||G84083 ABC transporter (ATP-binding
protein) BH3471 [imported] - Bacillus halodurans (strain
C-125) gi|10176094|dbj|BAB07190.1| ABC transporter
(ATP-binding protein) [Bacillus halodurans]
Length = 263
Score = 38.9 bits (89), Expect = 0.095
Identities = 13/31 (41%), Positives = 25/31 (79%)
Frame = -1
Query: 837 LNPERVHVLEEGKITRSGGMEIVESIEADGF 745
+ P++VHV+ +G+I +SGG E+ + +EA+G+
Sbjct: 213 ITPDKVHVMMQGRIVKSGGPELAQRLEAEGY 243
>gb|ZP_00059410.1| hypothetical protein [Thermobifida fusca]
Length = 303
Score = 38.5 bits (88), Expect = 0.12
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = -1
Query: 837 LNPERVHVLEEGKITRSGGMEIVESIEADGF 745
+ P+ VHV +GKI SGGM++ E++E +G+
Sbjct: 265 VKPDFVHVFADGKIVESGGMDLAETLETEGY 295
>ref|NP_579016.1| putative ABC transporter (ATP-binding protein) [Pyrococcus furiosus
DSM 3638] gi|18893385|gb|AAL81411.1| putative ABC
transporter (ATP-binding protein) [Pyrococcus furiosus
DSM 3638]
Length = 243
Score = 38.1 bits (87), Expect = 0.16
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = -1
Query: 837 LNPERVHVLEEGKITRSGGMEIVESIEADGFGKV 736
LNP +VHV++ GKI SG +++V+ IE G+ V
Sbjct: 205 LNPTKVHVIKNGKIVASGSIDLVKIIEERGYSAV 238
>pir||T44565 probable ATP-dependent transport protein [imported] - Pyrococcus
furiosus gi|6066238|gb|AAF03223.1|AF156097_3
hypothetical ATP-dependent transporter [Pyrococcus
furiosus]
Length = 247
Score = 38.1 bits (87), Expect = 0.16
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = -1
Query: 837 LNPERVHVLEEGKITRSGGMEIVESIEADGFGKV 736
LNP +VHV++ GKI SG +++V+ IE G+ V
Sbjct: 209 LNPTKVHVIKNGKIVASGSIDLVKIIEERGYSAV 242
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 738,700,005
Number of Sequences: 1393205
Number of extensions: 16546390
Number of successful extensions: 35874
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 34637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35864
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 43758763209
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
