Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003214A_C01 KMC003214A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568258.1| dihydropyrimidinase; protein id: At5g12200.1, s... 185 3e-46
dbj|BAB10038.1| dihydropyrimidinase [Arabidopsis thaliana] gi|28... 185 3e-46
dbj|BAB44078.1| putative dihydropyrimidinase [Oryza sativa (japo... 158 4e-38
gb|AAO33383.1|AF465757_1 dihydropyrimidine amidohydrolase [Dicty... 92 3e-18
ref|NP_740889.1| Ancestor of CRMP and dihydropyrimidinase, dihyd... 90 1e-17
>ref|NP_568258.1| dihydropyrimidinase; protein id: At5g12200.1, supported by cDNA:
gi_13878036, supported by cDNA: gi_17104600 [Arabidopsis
thaliana] gi|13878037|gb|AAK44096.1|AF370281_1 putative
dihydropyrimidinase [Arabidopsis thaliana]
gi|17104601|gb|AAL34189.1| putative dihydropyrimidinase
[Arabidopsis thaliana]
Length = 248
Score = 185 bits (469), Expect = 3e-46
Identities = 87/109 (79%), Positives = 100/109 (90%)
Frame = -1
Query: 500 NIYPKKGAILPGSDADIIILNPNSSFEITVKSHHSRLDTNVYEGRRGKGKVEVTIAGGRI 321
NIYP+KGAIL GSDADIIILNPNSS+EI+ KSHHSR DTNVYEGRRGKGKVEVTIAGGRI
Sbjct: 137 NIYPRKGAILAGSDADIIILNPNSSYEISSKSHHSRSDTNVYEGRRGKGKVEVTIAGGRI 196
Query: 320 VWENNELKVAPGTGKYIKTPPFNYLFDGLDKKDASYLNSLQAPVKRAKS 174
VWEN ELKV P +GKYI+ PPF+YLFDG++K DA+YL+SL+APVKR ++
Sbjct: 197 VWENEELKVVPRSGKYIEMPPFSYLFDGIEKSDANYLSSLRAPVKRVRT 245
>dbj|BAB10038.1| dihydropyrimidinase [Arabidopsis thaliana]
gi|28194047|gb|AAO33381.1|AF465755_1 dihydropyrimidine
amidohydrolase [Arabidopsis thaliana]
Length = 531
Score = 185 bits (469), Expect = 3e-46
Identities = 87/109 (79%), Positives = 100/109 (90%)
Frame = -1
Query: 500 NIYPKKGAILPGSDADIIILNPNSSFEITVKSHHSRLDTNVYEGRRGKGKVEVTIAGGRI 321
NIYP+KGAIL GSDADIIILNPNSS+EI+ KSHHSR DTNVYEGRRGKGKVEVTIAGGRI
Sbjct: 420 NIYPRKGAILAGSDADIIILNPNSSYEISSKSHHSRSDTNVYEGRRGKGKVEVTIAGGRI 479
Query: 320 VWENNELKVAPGTGKYIKTPPFNYLFDGLDKKDASYLNSLQAPVKRAKS 174
VWEN ELKV P +GKYI+ PPF+YLFDG++K DA+YL+SL+APVKR ++
Sbjct: 480 VWENEELKVVPRSGKYIEMPPFSYLFDGIEKSDANYLSSLRAPVKRVRT 528
>dbj|BAB44078.1| putative dihydropyrimidinase [Oryza sativa (japonica
cultivar-group)]
Length = 539
Score = 158 bits (399), Expect = 4e-38
Identities = 72/109 (66%), Positives = 91/109 (83%)
Frame = -1
Query: 500 NIYPKKGAILPGSDADIIILNPNSSFEITVKSHHSRLDTNVYEGRRGKGKVEVTIAGGRI 321
NIYP+KGAIL GSDADIIILNP SF + +HHSR +TNVYEGR+GKG VEVTI+ GR+
Sbjct: 429 NIYPRKGAILEGSDADIIILNPERSFVMGAHTHHSRSNTNVYEGRKGKGMVEVTISRGRV 488
Query: 320 VWENNELKVAPGTGKYIKTPPFNYLFDGLDKKDASYLNSLQAPVKRAKS 174
VWE+ L V PG+G+Y++TPP++YLFDG++K DA+Y SL+APVKR K+
Sbjct: 489 VWEDGILNVVPGSGRYVRTPPYSYLFDGIEKSDAAYRASLRAPVKRGKA 537
>gb|AAO33383.1|AF465757_1 dihydropyrimidine amidohydrolase [Dictyostelium discoideum]
Length = 503
Score = 92.0 bits (227), Expect = 3e-18
Identities = 40/93 (43%), Positives = 60/93 (64%)
Frame = -1
Query: 500 NIYPKKGAILPGSDADIIILNPNSSFEITVKSHHSRLDTNVYEGRRGKGKVEVTIAGGRI 321
NIYP+KG I G D DI+I +PN S I+ +HH +D N++EG + G TI G I
Sbjct: 386 NIYPRKGRIDVGCDGDIVIWDPNQSKTISKDTHHHAVDFNIFEGIKVTGIAVTTIVAGNI 445
Query: 320 VWENNELKVAPGTGKYIKTPPFNYLFDGLDKKD 222
VW +N+L G+G+++ PPF +FDG++++D
Sbjct: 446 VWSDNKLSCVKGSGRFVPRPPFGPVFDGIEQRD 478
>ref|NP_740889.1| Ancestor of CRMP and dihydropyrimidinase, dihydroorotase family
(53.8 kD) (dhp-1) [Caenorhabditis elegans]
gi|25992878|sp|Q21773|DPY1_CAEEL Dihydropyrimidinase 1
gi|12657583|dbj|BAB21560.1| CeCRMP/DHP-1 [Caenorhabditis
elegans] gi|18958137|emb|CAD24483.1| C. elegans DHP-1
protein (corresponding sequence R06C7.3a)
[Caenorhabditis elegans]
Length = 489
Score = 90.1 bits (222), Expect = 1e-17
Identities = 41/77 (53%), Positives = 55/77 (71%)
Frame = -1
Query: 500 NIYPKKGAILPGSDADIIILNPNSSFEITVKSHHSRLDTNVYEGRRGKGKVEVTIAGGRI 321
NIYP+KG I GSDADI+I NPN++ I+ +HH LD N++EG G EVTI+ GRI
Sbjct: 384 NIYPRKGRIAVGSDADIVIFNPNATRTISKDTHHHNLDFNIFEGINCHGVAEVTISRGRI 443
Query: 320 VWENNELKVAPGTGKYI 270
VW + +L+ PG+GK+I
Sbjct: 444 VWAHGKLQTVPGSGKFI 460
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,352,763
Number of Sequences: 1393205
Number of extensions: 9978986
Number of successful extensions: 22841
Number of sequences better than 10.0: 187
Number of HSP's better than 10.0 without gapping: 22215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22822
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
