Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003208A_C01 KMC003208A_c01
(649 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD28506.1|AF123265_1 remorin 1 [Lycopersicon esculentum] 130 2e-29
pir||T07780 remorin - potato gi|1881585|gb|AAB49425.1| remorin [... 127 1e-28
ref|NP_190463.1| remorin -like protein; protein id: At3g48940.1 ... 124 1e-27
gb|AAM63910.1| remorin [Arabidopsis thaliana] 123 2e-27
ref|NP_191685.1| putative DNA-binding protein; protein id: At3g6... 123 2e-27
>gb|AAD28506.1|AF123265_1 remorin 1 [Lycopersicon esculentum]
Length = 197
Score = 130 bits (326), Expect = 2e-29
Identities = 69/112 (61%), Positives = 83/112 (73%)
Frame = -3
Query: 647 KRLSLIKPWEESEKSIADNKAHPQLSDISAWENSKIAAKEVELRKIEENLEKKKAVYVEK 468
KRLSLIK WEESEKS A+NKA ++S I AWENSK A E EL+K+EE LEKKKA+Y EK
Sbjct: 87 KRLSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLESELKKMEEQLEKKKAIYTEK 146
Query: 467 LKNKIAMVHREAEEKRAFIEAKKGEDLSEGRGVSCKIPGPLEQAPKKPFSFF 312
+KNKIA++H+EAEEKRA IEAK+GEDL + ++ K APKK F
Sbjct: 147 MKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRA-TGTAPKKILGIF 197
>pir||T07780 remorin - potato gi|1881585|gb|AAB49425.1| remorin [Solanum
tuberosum]
Length = 198
Score = 127 bits (320), Expect = 1e-28
Identities = 68/112 (60%), Positives = 82/112 (72%)
Frame = -3
Query: 647 KRLSLIKPWEESEKSIADNKAHPQLSDISAWENSKIAAKEVELRKIEENLEKKKAVYVEK 468
KR+SLIK WEESEKS A+NKA ++S I AWENSK A E EL+K+EE LEKKKA Y EK
Sbjct: 88 KRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEK 147
Query: 467 LKNKIAMVHREAEEKRAFIEAKKGEDLSEGRGVSCKIPGPLEQAPKKPFSFF 312
+KNKIA++H+EAEEKRA IEAK+GEDL + ++ K APKK F
Sbjct: 148 MKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRA-TGTAPKKILGIF 198
>ref|NP_190463.1| remorin -like protein; protein id: At3g48940.1 [Arabidopsis
thaliana] gi|11281998|pir||T46136 remorin-like protein -
Arabidopsis thaliana gi|6522572|emb|CAB62016.1|
remorin-like protein [Arabidopsis thaliana]
Length = 175
Score = 124 bits (310), Expect = 1e-27
Identities = 63/112 (56%), Positives = 80/112 (71%)
Frame = -3
Query: 647 KRLSLIKPWEESEKSIADNKAHPQLSDISAWENSKIAAKEVELRKIEENLEKKKAVYVEK 468
KR+SLIK WEE+EKS +NKA ++S + AWENSK A+ E EL+KIEE L KKKA Y E+
Sbjct: 65 KRISLIKAWEEAEKSKVENKAQKKISSVGAWENSKKASVEAELKKIEEQLNKKKAHYTEQ 124
Query: 467 LKNKIAMVHREAEEKRAFIEAKKGEDLSEGRGVSCKIPGPLEQAPKKPFSFF 312
+KNKIA +H+EAEEKRA EAK+GED+ + ++ K AP K F FF
Sbjct: 125 MKNKIAQIHKEAEEKRAMTEAKRGEDVLKAEEMAAKYRA-TGTAPTKLFGFF 175
>gb|AAM63910.1| remorin [Arabidopsis thaliana]
Length = 202
Score = 123 bits (309), Expect = 2e-27
Identities = 63/109 (57%), Positives = 82/109 (74%)
Frame = -3
Query: 647 KRLSLIKPWEESEKSIADNKAHPQLSDISAWENSKIAAKEVELRKIEENLEKKKAVYVEK 468
KR+SLIK WEE+EK +NKA +LS I +WEN+K AA E EL+K+EE+LEKKKA YVE+
Sbjct: 92 KRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEHLEKKKAEYVEQ 151
Query: 467 LKNKIAMVHREAEEKRAFIEAKKGEDLSEGRGVSCKIPGPLEQAPKKPF 321
+KNKIA +H+EAEEKRA IEAK+GE++ + ++ K APKK F
Sbjct: 152 MKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRA-TGTAPKKLF 199
>ref|NP_191685.1| putative DNA-binding protein; protein id: At3g61260.1, supported by
cDNA: 40796., supported by cDNA: gi_17104524
[Arabidopsis thaliana] gi|11281997|pir||T47918 probable
DNA-binding protein - Arabidopsis thaliana
gi|6850893|emb|CAB71056.1| putative DNA-binding protein
[Arabidopsis thaliana]
gi|13878167|gb|AAK44161.1|AF370346_1 putative
DNA-binding protein [Arabidopsis thaliana]
gi|17104525|gb|AAL34151.1| putative DNA-binding protein
[Arabidopsis thaliana] gi|21593640|gb|AAM65607.1|
putative DNA-binding protein [Arabidopsis thaliana]
Length = 212
Score = 123 bits (308), Expect = 2e-27
Identities = 57/96 (59%), Positives = 76/96 (78%)
Frame = -3
Query: 647 KRLSLIKPWEESEKSIADNKAHPQLSDISAWENSKIAAKEVELRKIEENLEKKKAVYVEK 468
KRLS ++ WEESEKS A+NKA +++D+ AWENSK AA E +L+KIEE LEKKKA Y E+
Sbjct: 102 KRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAER 161
Query: 467 LKNKIAMVHREAEEKRAFIEAKKGEDLSEGRGVSCK 360
+KNK+A +H+EAEE+RA IEAK+GED+ + + K
Sbjct: 162 MKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAK 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,806,510
Number of Sequences: 1393205
Number of extensions: 11261614
Number of successful extensions: 31932
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 30362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31774
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
