Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003196A_C01 KMC003196A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL69492.1| unknown protein [Arabidopsis thaliana] 59 3e-08
ref|NP_196810.1| putative protein; protein id: At5g13060.1 [Arab... 59 3e-08
ref|NP_197434.1| putative protein; protein id: At5g19330.1 [Arab... 58 9e-08
ref|NP_689535.1| hypothetical protein FLJ33957 [Homo sapiens] gi... 32 0.52
dbj|BAC31741.1| unnamed protein product [Mus musculus] 32 0.60
>gb|AAL69492.1| unknown protein [Arabidopsis thaliana]
Length = 736
Score = 59.3 bits (142), Expect = 3e-08
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Frame = -3
Query: 556 IFIVNNGLELLLDLRESANLKHKSDASTALDKLATEATRVYCVFHAP--PSFKLYSGAPY 383
IFI NNG+E LL+L ++ K + +S+AL +LA +AT AP P+ +++ G +
Sbjct: 501 IFIDNNGVEFLLELLYFSSNKQQRYSSSALYELAKKATSFAPEDSAPCSPTQQVFLGEKF 560
Query: 382 VNHPQCF*CHILS*R*KVLCS*RFFKGYL-----SDVFRAML*SVLYGK*CPRLLEIPNT 218
VN+P L + +F+ + SD+FRAM LY + + +EIPN
Sbjct: 561 VNNPTMSDVTFL------IDGKQFYAHKIGLVASSDIFRAMF-DGLYKERNAQNVEIPNI 613
Query: 217 KWDVFELMMRY 185
+W+VFELMM++
Sbjct: 614 RWEVFELMMKF 624
Score = 36.6 bits (83), Expect = 0.21
Identities = 22/46 (47%), Positives = 29/46 (62%), Gaps = 3/46 (6%)
Frame = -1
Query: 366 VSDVTFLVEGKRFYAHRGSLKA---IFLMYFVLCSDQCYMESDAQD 238
+SDVTFL++GK+FYAH+ L A IF F D Y E +AQ+
Sbjct: 566 MSDVTFLIDGKQFYAHKIGLVASSDIFRAMF----DGLYKERNAQN 607
>ref|NP_196810.1| putative protein; protein id: At5g13060.1 [Arabidopsis thaliana]
gi|9955550|emb|CAC05434.1| putative protein [Arabidopsis
thaliana]
Length = 706
Score = 59.3 bits (142), Expect = 3e-08
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Frame = -3
Query: 556 IFIVNNGLELLLDLRESANLKHKSDASTALDKLATEATRVYCVFHAP--PSFKLYSGAPY 383
IFI NNG+E LL+L ++ K + +S+AL +LA +AT AP P+ +++ G +
Sbjct: 471 IFIDNNGVEFLLELLYFSSNKQQRYSSSALYELAKKATSFAPEDSAPCSPTQQVFLGEKF 530
Query: 382 VNHPQCF*CHILS*R*KVLCS*RFFKGYL-----SDVFRAML*SVLYGK*CPRLLEIPNT 218
VN+P L + +F+ + SD+FRAM LY + + +EIPN
Sbjct: 531 VNNPTMSDVTFL------IDGKQFYAHKIGLVASSDIFRAMF-DGLYKERNAQNVEIPNI 583
Query: 217 KWDVFELMMRY 185
+W+VFELMM++
Sbjct: 584 RWEVFELMMKF 594
Score = 36.6 bits (83), Expect = 0.21
Identities = 22/46 (47%), Positives = 29/46 (62%), Gaps = 3/46 (6%)
Frame = -1
Query: 366 VSDVTFLVEGKRFYAHRGSLKA---IFLMYFVLCSDQCYMESDAQD 238
+SDVTFL++GK+FYAH+ L A IF F D Y E +AQ+
Sbjct: 536 MSDVTFLIDGKQFYAHKIGLVASSDIFRAMF----DGLYKERNAQN 577
>ref|NP_197434.1| putative protein; protein id: At5g19330.1 [Arabidopsis thaliana]
Length = 636
Score = 57.8 bits (138), Expect = 9e-08
Identities = 46/119 (38%), Positives = 59/119 (48%), Gaps = 2/119 (1%)
Frame = -3
Query: 535 LELLLDLRESANLKHKSDASTALDKLATEATRVYCVFHAPPS--FKLYSGAPYVNHPQCF 362
LELLL L S N K + D + AL KLA ++ + V APPS ++Y G YVN+
Sbjct: 449 LELLLGLLGSLNTKQQLDGAAALYKLANKSMALSPVDAAPPSPTQRVYLGEQYVNNATLS 508
Query: 361 *CHILS*R*KVLCS*RFFKGYLSDVFRAML*SVLYGK*CPRLLEIPNTKWDVFELMMRY 185
L + D FRAM Y + R +EIPN KW+VFELMMR+
Sbjct: 509 DVTFL----------------VEDAFRAMFDGG-YREKDARDIEIPNIKWEVFELMMRF 550
>ref|NP_689535.1| hypothetical protein FLJ33957 [Homo sapiens]
gi|21749609|dbj|BAC03626.1| unnamed protein product
[Homo sapiens]
Length = 183
Score = 32.3 bits (72), Expect(2) = 0.52
Identities = 13/17 (76%), Positives = 16/17 (93%)
Frame = -1
Query: 366 VSDVTFLVEGKRFYAHR 316
+SDVTFLVEG+ FYAH+
Sbjct: 1 MSDVTFLVEGRPFYAHK 17
Score = 21.9 bits (45), Expect(2) = 0.52
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = -3
Query: 235 LEIPNTKWDVFELMMR---YGGAE 173
+EI K+ +F+L+M+ YGG E
Sbjct: 42 IEIGYVKYSIFQLVMQYLYYGGPE 65
>dbj|BAC31741.1| unnamed protein product [Mus musculus]
Length = 626
Score = 32.3 bits (72), Expect(2) = 0.60
Identities = 13/17 (76%), Positives = 16/17 (93%)
Frame = -1
Query: 366 VSDVTFLVEGKRFYAHR 316
+SDVTFLVEG+ FYAH+
Sbjct: 444 MSDVTFLVEGRPFYAHK 460
Score = 21.6 bits (44), Expect(2) = 0.60
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = -3
Query: 235 LEIPNTKWDVFELMMR---YGGAE 173
+EI K+ +F+L+M+ YGG E
Sbjct: 485 IEIGYVKYPIFQLVMQYLYYGGPE 508
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,716,699
Number of Sequences: 1393205
Number of extensions: 9372770
Number of successful extensions: 19156
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 18651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19152
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
