Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003192A_C01 KMC003192A_c01
(652 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179485.2| hypothetical protein; protein id: At2g18950.1, ... 146 2e-34
pir||T01623 hypothetical protein At2g18950 [imported] - Arabidop... 114 9e-25
gb|ZP_00107768.1| hypothetical protein [Nostoc punctiforme] 77 3e-13
ref|NP_441094.1| unknown protein [Synechocystis sp. PCC 6803] gi... 74 2e-12
ref|NP_487488.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 72 5e-12
>ref|NP_179485.2| hypothetical protein; protein id: At2g18950.1, supported by cDNA:
gi_17104827, supported by cDNA: gi_17380873, supported
by cDNA: gi_20384918, supported by cDNA: gi_21281071
[Arabidopsis thaliana]
gi|17104828|gb|AAL35412.1|AF324344_1 tocopherol
polyprenyltransferase [Arabidopsis thaliana]
gi|17380874|gb|AAL36249.1| unknown protein [Arabidopsis
thaliana] gi|20384919|gb|AAM10489.1| homogentisate
phytylprenyltransferase [Arabidopsis thaliana]
gi|21281072|gb|AAM45041.1| unknown protein [Arabidopsis
thaliana]
Length = 393
Score = 146 bits (369), Expect = 2e-34
Identities = 66/123 (53%), Positives = 93/123 (74%)
Frame = -1
Query: 649 LNFVMVFMSLYSIGIALFQDLPDIEGDKKHGISTFATRFGQKPVFWFCVSLFEIAFGIAL 470
L F FMS +S+ IALF+D+PDIEGDK GI +F+ GQK VFW CV+L ++A+ +A+
Sbjct: 271 LIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAI 330
Query: 469 GVGATSSFMWSKIVTGMGNVVLASVLWHNAKSVDLKSQASLSSFYMLAWKLLFAEYLLMP 290
VGATS F+WSK+++ +G+V+LA+ LW AKSVDL S+ ++S YM WKL +AEYLL+P
Sbjct: 331 LVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWKLFYAEYLLLP 390
Query: 289 LVR 281
++
Sbjct: 391 FLK 393
>pir||T01623 hypothetical protein At2g18950 [imported] - Arabidopsis thaliana
gi|3004556|gb|AAC09029.1| hypothetical protein
[Arabidopsis thaliana]
Length = 210
Score = 114 bits (286), Expect = 9e-25
Identities = 55/112 (49%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
Frame = -1
Query: 643 FVMVFMSLYSIGIAL-FQDLPDIEGDKKHGISTFATRFGQKPVFWFCVSLFEIAFGIALG 467
F +F+S + +G A D+PDIEGDK GI +F+ GQK VFW CV+L ++A+ +A+
Sbjct: 97 FWALFVS-FMLGTAYSINDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAIL 155
Query: 466 VGATSSFMWSKIVTGMGNVVLASVLWHNAKSVDLKSQASLSSFYMLAWKLLF 311
VGATS F+WSK+++ +G+V+LA+ LW AKSVDL S+ ++S YM WK+ F
Sbjct: 156 VGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWKVRF 207
>gb|ZP_00107768.1| hypothetical protein [Nostoc punctiforme]
Length = 322
Score = 76.6 bits (187), Expect = 3e-13
Identities = 35/116 (30%), Positives = 67/116 (57%)
Frame = -1
Query: 634 VFMSLYSIGIALFQDLPDIEGDKKHGISTFATRFGQKPVFWFCVSLFEIAFGIALGVGAT 455
+F+ +++ IA+F+D+PDIEGD+ + I+TF + G + VF + + + + + VG
Sbjct: 202 LFILVFTFAIAIFKDIPDIEGDRLYNITTFTIKLGSQAVFNLALWVITVCYLGIILVGVL 261
Query: 454 SSFMWSKIVTGMGNVVLASVLWHNAKSVDLKSQASLSSFYMLAWKLLFAEYLLMPL 287
+ I ++ L +W + +VDL+ +++++ FY WKL F EYL+ P+
Sbjct: 262 RIASVNPIFLITAHLALLVWMWWRSLAVDLQDKSAIAQFYQFIWKLFFIEYLIFPI 317
>ref|NP_441094.1| unknown protein [Synechocystis sp. PCC 6803] gi|7470486|pir||S74813
hypothetical protein slr1736 - Synechocystis sp. (strain
PCC 6803) gi|1652856|dbj|BAA17774.1|
ORF_ID:slr1736~unknown protein [Synechocystis sp. PCC
6803]
Length = 308
Score = 73.6 bits (179), Expect = 2e-12
Identities = 37/117 (31%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Frame = -1
Query: 634 VFMSLYSIGIALFQDLPDIEGDKKHGISTFATRFGQKPVFWFCVSLFEIAFGIALGV-GA 458
+F+ ++++ IA+F+D+PD+EGD++ I T + G++ VF + L + +A+ + G
Sbjct: 181 LFILVFTVAIAIFKDVPDMEGDRQFKIQTLTLQIGKQNVFRGTLILLTGCY-LAMAIWGL 239
Query: 457 TSSFMWSKIVTGMGNVVLASVLWHNAKSVDLKSQASLSSFYMLAWKLLFAEYLLMPL 287
++ + + ++ L ++LW ++ V L+S+ ++SFY WKL F EYLL PL
Sbjct: 240 WAAMPLNTAFLIVSHLCLLALLWWRSRDVHLESKTEIASFYQFIWKLFFLEYLLYPL 296
>ref|NP_487488.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25535404|pir||AI2236
hypothetical protein alr3448 [imported] - Nostoc sp.
(strain PCC 7120) gi|17132581|dbj|BAB75147.1|
ORF_ID:alr3448~hypothetical protein [Nostoc sp. PCC
7120]
Length = 318
Score = 72.4 bits (176), Expect = 5e-12
Identities = 31/116 (26%), Positives = 66/116 (56%)
Frame = -1
Query: 634 VFMSLYSIGIALFQDLPDIEGDKKHGISTFATRFGQKPVFWFCVSLFEIAFGIALGVGAT 455
VF+ +++ IA+F+D+PD+EGD+ + I+T + G + VF + + + + + +G
Sbjct: 198 VFILIFTFAIAIFKDIPDMEGDRLYNITTLTIQLGPQAVFNLAMWVLTVCYLGMVIIGVL 257
Query: 454 SSFMWSKIVTGMGNVVLASVLWHNAKSVDLKSQASLSSFYMLAWKLLFAEYLLMPL 287
+ + + ++V+ +W + +VD+ + +++ FY WKL F EYL+ P+
Sbjct: 258 RLGTINSVFLVVTHLVILCWMWMQSLAVDIHDKTAIAQFYQFIWKLFFLEYLMFPI 313
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,706,355
Number of Sequences: 1393205
Number of extensions: 11136723
Number of successful extensions: 26874
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 26284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26866
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
