Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003190A_C01 KMC003190A_c01
(632 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC39053.1| putative enoyl-CoA hydratase [Oryza sativa] 152 4e-36
emb|CAB96201.1| hypothetical protein [Capsella rubella] 139 2e-32
gb|AAM18495.1|AF494369_1 enoyl-CoA hydratase [Arabidopsis lyrata... 138 7e-32
emb|CAB88078.1| hypothetical protein [Arabidopsis thaliana] 137 9e-32
ref|NP_193413.1| enoyl-CoA hydratase; protein id: At4g16800.1 [A... 137 9e-32
>emb|CAC39053.1| putative enoyl-CoA hydratase [Oryza sativa]
Length = 295
Score = 152 bits (384), Expect = 4e-36
Identities = 68/102 (66%), Positives = 93/102 (90%)
Frame = -3
Query: 630 KDIIFTGRKINGKEALSMGLVNYCVPAGEAYSKALAVARDINQKGPIALRMAKRAINEGV 451
K++IFTGR+ + EA++MG+VNYCVPAGEAY +AL +A++INQKGP+A+RMAK+AIN+G+
Sbjct: 194 KELIFTGRRFDAVEAVTMGVVNYCVPAGEAYKRALELAQEINQKGPLAIRMAKKAINQGM 253
Query: 450 ETDLTSALVLEEDCYDQVLNTKDRLEGLAAFADKRKPRYTGE 325
E DL++ L +EE+CY+QVL+T+DRLEGLAAFA+KRKP YTG+
Sbjct: 254 EVDLSAGLAVEEECYEQVLHTQDRLEGLAAFAEKRKPVYTGK 295
>emb|CAB96201.1| hypothetical protein [Capsella rubella]
Length = 229
Score = 139 bits (351), Expect = 2e-32
Identities = 64/102 (62%), Positives = 87/102 (84%)
Frame = -3
Query: 630 KDIIFTGRKINGKEALSMGLVNYCVPAGEAYSKALAVARDINQKGPIALRMAKRAINEGV 451
K++IFTGRKI+ +EA + GLVN CV AGEA+ KA+ +A+ IN+KGP+A++MAK+AI+EG+
Sbjct: 128 KELIFTGRKIDAREAANKGLVNICVTAGEAHEKAIEMAQQINEKGPLAIKMAKKAIDEGI 187
Query: 450 ETDLTSALVLEEDCYDQVLNTKDRLEGLAAFADKRKPRYTGE 325
ET++ S L +EE CY +LNT+DRLEGLAAFA+KRKP YTG+
Sbjct: 188 ETNMASGLEVEEMCYQNLLNTQDRLEGLAAFAEKRKPLYTGK 229
>gb|AAM18495.1|AF494369_1 enoyl-CoA hydratase [Arabidopsis lyrata subsp. petraea]
Length = 229
Score = 138 bits (347), Expect = 7e-32
Identities = 64/102 (62%), Positives = 87/102 (84%)
Frame = -3
Query: 630 KDIIFTGRKINGKEALSMGLVNYCVPAGEAYSKALAVARDINQKGPIALRMAKRAINEGV 451
K++IFTGRKI+ EA + GLVN CV AGEA+ KA+ +A+ IN+KGP+A++MAK+AI+EG+
Sbjct: 128 KELIFTGRKIDAIEAATKGLVNICVTAGEAHEKAIEMAQQINEKGPLAIKMAKKAIDEGI 187
Query: 450 ETDLTSALVLEEDCYDQVLNTKDRLEGLAAFADKRKPRYTGE 325
ET++ S L +EE CY ++LNT+DRLEGLAAFA+KRKP YTG+
Sbjct: 188 ETNMASGLEVEEMCYQKLLNTQDRLEGLAAFAEKRKPLYTGK 229
>emb|CAB88078.1| hypothetical protein [Arabidopsis thaliana]
Length = 217
Score = 137 bits (346), Expect = 9e-32
Identities = 64/101 (63%), Positives = 86/101 (84%)
Frame = -3
Query: 630 KDIIFTGRKINGKEALSMGLVNYCVPAGEAYSKALAVARDINQKGPIALRMAKRAINEGV 451
K++IFTGRKI+ EA + GLVN CV AGEA+ KA+ +A+ IN+KGP+A++MAK+AI+EG+
Sbjct: 116 KELIFTGRKIDAIEAANKGLVNICVTAGEAHEKAIEMAQQINEKGPLAIKMAKKAIDEGI 175
Query: 450 ETDLTSALVLEEDCYDQVLNTKDRLEGLAAFADKRKPRYTG 328
ET++ S L +EE CY ++LNT+DRLEGLAAFA+KRKP YTG
Sbjct: 176 ETNMASGLEVEEMCYQKLLNTQDRLEGLAAFAEKRKPLYTG 216
>ref|NP_193413.1| enoyl-CoA hydratase; protein id: At4g16800.1 [Arabidopsis thaliana]
gi|7428379|pir||C71435 probable enoyl-CoA hydratase (EC
4.2.1.17) - Arabidopsis thaliana
gi|2245034|emb|CAB10453.1| enoyl-CoA hydratase
[Arabidopsis thaliana] gi|7268430|emb|CAB78722.1|
enoyl-CoA hydratase [Arabidopsis thaliana]
gi|22136626|gb|AAM91632.1| putative enoyl-CoA hydratase
[Arabidopsis thaliana]
Length = 229
Score = 137 bits (346), Expect = 9e-32
Identities = 64/101 (63%), Positives = 86/101 (84%)
Frame = -3
Query: 630 KDIIFTGRKINGKEALSMGLVNYCVPAGEAYSKALAVARDINQKGPIALRMAKRAINEGV 451
K++IFTGRKI+ EA + GLVN CV AGEA+ KA+ +A+ IN+KGP+A++MAK+AI+EG+
Sbjct: 128 KELIFTGRKIDAIEAANKGLVNICVTAGEAHEKAIEMAQQINEKGPLAIKMAKKAIDEGI 187
Query: 450 ETDLTSALVLEEDCYDQVLNTKDRLEGLAAFADKRKPRYTG 328
ET++ S L +EE CY ++LNT+DRLEGLAAFA+KRKP YTG
Sbjct: 188 ETNMASGLEVEEMCYQKLLNTQDRLEGLAAFAEKRKPLYTG 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,964,376
Number of Sequences: 1393205
Number of extensions: 10741966
Number of successful extensions: 24686
Number of sequences better than 10.0: 545
Number of HSP's better than 10.0 without gapping: 24016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24564
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
