Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003180A_C01 KMC003180A_c01
(805 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565878.1| expressed protein; protein id: At2g37990.1, sup... 216 2e-55
gb|AAM65576.1| unknown [Arabidopsis thaliana] 213 2e-54
sp|Q9SH88|RRS1_ARATH Ribosome biogenesis regulatory protein homo... 199 4e-50
ref|NP_067486.1| regulator for ribosome resistance homolog; DNA ... 128 9e-29
sp|Q9CYH6|RRS1_MOUSE Ribosome biogenesis regulatory protein homo... 128 9e-29
>ref|NP_565878.1| expressed protein; protein id: At2g37990.1, supported by cDNA:
40538. [Arabidopsis thaliana]
Length = 318
Score = 216 bits (551), Expect = 2e-55
Identities = 111/250 (44%), Positives = 163/250 (64%)
Frame = -2
Query: 756 VEHQKVFEVDLGHLMAFDSHHTFPTQPPLSREDLVKQALQKGTELVQAIADSLFTLPATE 577
+E +++++VD+G+L+AF+ +H FP+ P SR +LVK+ L +GT+LVQ IA+ LF P+TE
Sbjct: 5 METEQIYQVDVGNLLAFNPNHRFPSAPS-SRGELVKEILTEGTKLVQEIANKLFNFPSTE 63
Query: 576 DVDGPLVKLPAPLTRLPREKHLPKPKPPTKWEAFAKKKGIQKKKKDKVLYDEQSGTWKRR 397
DGP+V+LP P T+LPREKH+P+PKPPTKWE FA KKGIQK+KK+KV++DEQ+ +KRR
Sbjct: 64 TNDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRR 123
Query: 396 YGYDRANDEDAVPIIEAKETDDPTEDPFAKRKENKRNRVDKQETKPTTELERSCKIWCFT 217
+GYDR ND++ VPIIEAKE+D+P DPFAKR ++K+ RV KQE L+ + K
Sbjct: 124 HGYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALP 183
Query: 216 KPCSVGCYSFAYNRNSSSTHRKLPRMN*VMLQELLQLQQLVVGNLTRNWRVRSLHQHKGK 37
+ S + + + +K+ + + L G + + +GK
Sbjct: 184 SHVQLAATSLPIS-GTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGK 242
Query: 36 YRKFLPVAEG 7
+ K+LPV G
Sbjct: 243 HHKYLPVVSG 252
>gb|AAM65576.1| unknown [Arabidopsis thaliana]
Length = 318
Score = 213 bits (543), Expect = 2e-54
Identities = 110/250 (44%), Positives = 162/250 (64%)
Frame = -2
Query: 756 VEHQKVFEVDLGHLMAFDSHHTFPTQPPLSREDLVKQALQKGTELVQAIADSLFTLPATE 577
+E +++++VD+G+L+AF+ +H F + P SR +LVK+ L +GT+LVQ IA+ LF P+TE
Sbjct: 5 METEQIYQVDVGNLLAFNPNHRFSSAPS-SRGELVKEILTEGTKLVQEIANKLFNFPSTE 63
Query: 576 DVDGPLVKLPAPLTRLPREKHLPKPKPPTKWEAFAKKKGIQKKKKDKVLYDEQSGTWKRR 397
DGP+V+LP P T+LPREKH+P+PKPPTKWE FA KKGIQK+KK+KV++DEQ+ +KRR
Sbjct: 64 TNDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRR 123
Query: 396 YGYDRANDEDAVPIIEAKETDDPTEDPFAKRKENKRNRVDKQETKPTTELERSCKIWCFT 217
+GYDR ND++ VPIIEAKE+D+P DPFAKR ++K+ RV KQE L+ + K
Sbjct: 124 HGYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALP 183
Query: 216 KPCSVGCYSFAYNRNSSSTHRKLPRMN*VMLQELLQLQQLVVGNLTRNWRVRSLHQHKGK 37
+ S + + + +K+ + + L G + + +GK
Sbjct: 184 SHVQLAATSLPIS-GTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGK 242
Query: 36 YRKFLPVAEG 7
+ K+LPV G
Sbjct: 243 HHKYLPVVSG 252
>sp|Q9SH88|RRS1_ARATH Ribosome biogenesis regulatory protein homolog
gi|25408583|pir||F84799 hypothetical protein At2g37990
[imported] - Arabidopsis thaliana
Length = 352
Score = 199 bits (506), Expect = 4e-50
Identities = 111/284 (39%), Positives = 163/284 (57%), Gaps = 34/284 (11%)
Frame = -2
Query: 756 VEHQKVFEVDLGHLMAFDSHHTFPTQPPLSREDLVKQALQKGTELVQAIADSLFTLPATE 577
+E +++++VD+G+L+AF+ +H FP+ P SR +LVK+ L +GT+LVQ IA+ LF P+TE
Sbjct: 5 METEQIYQVDVGNLLAFNPNHRFPSAPS-SRGELVKEILTEGTKLVQEIANKLFNFPSTE 63
Query: 576 DVDGPLVKLPAPLTRLPREKHLPKPKPPTKWEAFAKKKGIQKKKKDKVLYDEQSGTWKRR 397
DGP+V+LP P T+LPREKH+P+PKPPTKWE FA KKGIQK+KK+KV++DEQ+ +KRR
Sbjct: 64 TNDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRR 123
Query: 396 YGYDRANDEDAVPIIEAKETD----------------------------------DPTED 319
+GYDR ND++ VPIIEAKE+D +P D
Sbjct: 124 HGYDRVNDDNDVPIIEAKESDETMLKSNLFEFEDKDMELHYIIFSTIYESFWLIAEPGVD 183
Query: 318 PFAKRKENKRNRVDKQETKPTTELERSCKIWCFTKPCSVGCYSFAYNRNSSSTHRKLPRM 139
PFAKR ++K+ RV KQE L+ + K + S + + + +K+ +
Sbjct: 184 PFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALPSHVQLAATSLPIS-GTKAQPKKIGKD 242
Query: 138 N*VMLQELLQLQQLVVGNLTRNWRVRSLHQHKGKYRKFLPVAEG 7
+ L G + + +GK+ K+LPV G
Sbjct: 243 ELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKHHKYLPVVSG 286
Score = 65.9 bits (159), Expect(2) = 1e-21
Identities = 30/39 (76%), Positives = 35/39 (88%)
Frame = -1
Query: 169 KQHPQKVTKDELGNVAGIAATSTASGGEFDKKLAGEKPP 53
K P+K+ KDELG+VAG+AATSTASGG+FDKKL GEKPP
Sbjct: 233 KAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPP 271
Score = 59.7 bits (143), Expect(2) = 1e-21
Identities = 28/38 (73%), Positives = 34/38 (88%)
Frame = -3
Query: 272 RRQNRLQNLKEAAKSGALPSHVQLAATALPITGTQAAP 159
+ +NRLQNLK A K+GALPSHVQLAAT+LPI+GT+A P
Sbjct: 199 QEKNRLQNLKAAEKAGALPSHVQLAATSLPISGTKAQP 236
>ref|NP_067486.1| regulator for ribosome resistance homolog; DNA segment, Chr 1,
ERATO Doi 701, expressed [Mus musculus]
gi|7670442|dbj|BAA95072.1| unnamed protein product [Mus
musculus]
Length = 365
Score = 128 bits (322), Expect = 9e-29
Identities = 84/248 (33%), Positives = 126/248 (49%), Gaps = 1/248 (0%)
Frame = -2
Query: 756 VEHQKVFEVDLGHLMAFDSHH-TFPTQPPLSREDLVKQALQKGTELVQAIADSLFTLPAT 580
V + E DLG+L+A D + T Q S E ++ + T+L + + L+ LP
Sbjct: 26 VHKELELEFDLGNLLASDRNPPTVLRQAGPSPEAELRALARDNTQL---LINQLWRLPTE 82
Query: 579 EDVDGPLVKLPAPLTRLPREKHLPKPKPPTKWEAFAKKKGIQKKKKDKVLYDEQSGTWKR 400
+ + +LP P TRLPREK LP+P+P T+W+ FA+ KGI+ KKK +++DE SG W+R
Sbjct: 83 RVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEASGQWRR 142
Query: 399 RYGYDRANDEDAVPIIEAKETDDPTEDPFAKRKENKRNRVDKQETKPTTELERSCKIWCF 220
R+GY RA D+ +IE + DP ED FAKR + K+ RV K E L R+ K+
Sbjct: 143 RWGYKRARDDTKEWLIEVPGSADPMEDQFAKRTQAKKERVAKNELNRLRNLARAHKM--- 199
Query: 219 TKPCSVGCYSFAYNRNSSSTHRKLPRMN*VMLQELLQLQQLVVGNLTRNWRVRSLHQHKG 40
P S G + + H+ + M ++ ++ VG + G
Sbjct: 200 QMPSSAGLH--------PTGHQSKEELGRAM--QVAKVSTASVGRFQERLPKEKAPRGSG 249
Query: 39 KYRKFLPV 16
K RKF P+
Sbjct: 250 KKRKFQPL 257
>sp|Q9CYH6|RRS1_MOUSE Ribosome biogenesis regulatory protein homolog
gi|12857046|dbj|BAB30871.1| unnamed protein product [Mus
musculus] gi|13097501|gb|AAH03481.1| RIKEN cDNA
5730466A07 gene [Mus musculus]
Length = 365
Score = 128 bits (322), Expect = 9e-29
Identities = 84/248 (33%), Positives = 126/248 (49%), Gaps = 1/248 (0%)
Frame = -2
Query: 756 VEHQKVFEVDLGHLMAFDSHH-TFPTQPPLSREDLVKQALQKGTELVQAIADSLFTLPAT 580
V + E DLG+L+A D + T Q S E ++ + T+L + + L+ LP
Sbjct: 26 VHKELELEFDLGNLLASDRNPPTVLRQAGPSPEAELRALARDNTQL---LINQLWRLPTE 82
Query: 579 EDVDGPLVKLPAPLTRLPREKHLPKPKPPTKWEAFAKKKGIQKKKKDKVLYDEQSGTWKR 400
+ + +LP P TRLPREK LP+P+P T+W+ FA+ KGI+ KKK +++DE SG W+R
Sbjct: 83 RVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEASGQWRR 142
Query: 399 RYGYDRANDEDAVPIIEAKETDDPTEDPFAKRKENKRNRVDKQETKPTTELERSCKIWCF 220
R+GY RA D+ +IE + DP ED FAKR + K+ RV K E L R+ K+
Sbjct: 143 RWGYKRARDDTKEWLIEVPGSADPMEDQFAKRTQAKKERVAKNELNRLRNLARAHKM--- 199
Query: 219 TKPCSVGCYSFAYNRNSSSTHRKLPRMN*VMLQELLQLQQLVVGNLTRNWRVRSLHQHKG 40
P S G + + H+ + M ++ ++ VG + G
Sbjct: 200 QMPSSAGLH--------PTGHQSKEELGRAM--QVAKVSTASVGRFQERLPKEKAPRGSG 249
Query: 39 KYRKFLPV 16
K RKF P+
Sbjct: 250 KKRKFQPL 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 745,116,602
Number of Sequences: 1393205
Number of extensions: 17370605
Number of successful extensions: 72370
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 62698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71719
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40896270532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
