Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003179A_C01 KMC003179A_c01
(412 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA16372.1| hypothetical protein [Plasmodium yoelii yoelii] 33 0.84
ref|XP_173014.2| similar to expressed sequence AI415265; hypothe... 32 2.4
ref|NP_777596.1| hypothetical protein LOC255738 [Homo sapiens] g... 32 2.4
ref|NP_506335.1| Predicted CDS, putative membrane protein, with ... 31 3.2
sp|P02382|RMS5_EMENI MITOCHONDRIAL RIBOSOMAL PROTEIN S5 gi|71052... 31 3.2
>gb|EAA16372.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1784
Score = 33.1 bits (74), Expect = 0.84
Identities = 22/83 (26%), Positives = 41/83 (48%), Gaps = 12/83 (14%)
Frame = -2
Query: 237 YQLVMNIALYIDS----HERKKGNNHVYIVLV*ETKLL-----SLSNAFPFLCSFNLYLP 85
Y L+ N YI+ HE K NN++Y + + + L ++SN L + N+Y+
Sbjct: 1636 YNLIDNEWEYIEDNVLIHEIKMDNNYLYTMFIHDKFLTKRYYQAMSNLIIDLSNNNIYIK 1695
Query: 84 RP---LSFGYKIYLSFNYPVHIN 25
+ + + Y Y +N P+H++
Sbjct: 1696 KLDIYIDYNYSPYTLYNIPIHMS 1718
>ref|XP_173014.2| similar to expressed sequence AI415265; hypothetical protein
MGC47409 [Mus musculus] [Homo sapiens]
Length = 692
Score = 31.6 bits (70), Expect = 2.4
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 305 TAPFHKVMKDPLSLPGTAMFNPEMETSIQKSQK 403
TA FH+ KDP LPGT + + ET + +S++
Sbjct: 61 TATFHRCAKDPWRLPGTYVVVLKEETHLSQSER 93
>ref|NP_777596.1| hypothetical protein LOC255738 [Homo sapiens]
gi|22761405|dbj|BAC11572.1| unnamed protein product
[Homo sapiens]
Length = 578
Score = 31.6 bits (70), Expect = 2.4
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 305 TAPFHKVMKDPLSLPGTAMFNPEMETSIQKSQK 403
TA FH+ KDP LPGT + + ET + +S++
Sbjct: 61 TATFHRCAKDPWRLPGTYVVVLKEETHLSQSER 93
>ref|NP_506335.1| Predicted CDS, putative membrane protein, with a transmembrane
domain, 2 coiled coil-4 domains, nematode specific
[Caenorhabditis elegans] gi|7509516|pir||T21379
hypothetical protein Y2H9A.4 - Caenorhabditis elegans
gi|3979925|emb|CAA16278.1| Hypothetical protein Y2H9A.4
[Caenorhabditis elegans] gi|3980318|emb|CAB02996.1|
Hypothetical protein Y2H9A.4 [Caenorhabditis elegans]
Length = 699
Score = 31.2 bits (69), Expect = 3.2
Identities = 18/42 (42%), Positives = 21/42 (49%), Gaps = 1/42 (2%)
Frame = +1
Query: 271 LFLLVFGR*KNYRPIPQSD-ERSPVSSRNRHVQPRNGNIDSK 393
LF L+F K Y PIP SD E P N H +G+ D K
Sbjct: 274 LFKLIFYNQKGYIPIPSSDPENPPDGISNGHTHNFSGSTDGK 315
>sp|P02382|RMS5_EMENI MITOCHONDRIAL RIBOSOMAL PROTEIN S5 gi|71052|pir||QXASRI 21S rRNA
intron protein - Emericella nidulans mitochondrion
gi|12709|emb|CAA30032.1| L-rRNA intron frame (AA 1-410)
[Emericella nidulans] gi|472822|gb|AAA99208.1| unknown
protein
Length = 410
Score = 31.2 bits (69), Expect = 3.2
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = -2
Query: 291 AKDKEK*TAAFG-DLFSLHYQLVMNIALYIDSHERKKGNNHVYIVLV*ETKLLSLSNAFP 115
AK K+K T+ FG D+F QL+ + A+ I + ++KK ++ TK+ + N +
Sbjct: 125 AKLKKKYTSLFGKDIFIKKLQLIKSKAIGILTQQQKKSKTLTNVLPKYSTKVNKIQNIY- 183
Query: 114 FLCSFNLYLPRPLSFGYKIYLSFNYPVHINK 22
+ Y+ + + K Y+ + ++INK
Sbjct: 184 ----YRTYIKKSIK-RLKYYMYYKQLLYINK 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 366,684,671
Number of Sequences: 1393205
Number of extensions: 7837208
Number of successful extensions: 18607
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 18231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18604
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 7023606888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
