Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003176A_C01 KMC003176A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM60990.1| unknown [Arabidopsis thaliana] 90 2e-17
ref|NP_189909.1| putative protein; protein id: At3g43230.1, supp... 90 2e-17
dbj|BAC16013.1| contains ESTs AU062478(C11349),AU092192(C11349),... 79 5e-14
ref|NP_174273.1| unknown protein; protein id: At1g29800.1 [Arabi... 54 1e-06
ref|NP_593048.1| conserved hypothetical SH3 domain protein [Schi... 40 0.021
>gb|AAM60990.1| unknown [Arabidopsis thaliana]
Length = 486
Score = 90.1 bits (222), Expect = 2e-17
Identities = 41/54 (75%), Positives = 50/54 (91%)
Frame = -2
Query: 571 SLEGNIVATRRDANLRFYGDPYLTTSDILLGMVDRPKAAQPLYASLQALYSSLR 410
SLEGN+VATRRD N++FYGDPYL+TSDILLGMVD+PKAA+PLY +L+ LY+ LR
Sbjct: 432 SLEGNLVATRRDMNVKFYGDPYLSTSDILLGMVDQPKAAEPLYTALRELYARLR 485
>ref|NP_189909.1| putative protein; protein id: At3g43230.1, supported by cDNA:
107823., supported by cDNA: gi_17979084, supported by
cDNA: gi_20465340 [Arabidopsis thaliana]
gi|11357848|pir||T49237 hypothetical protein F7K15.80 -
Arabidopsis thaliana gi|7649363|emb|CAB89044.1| putative
protein [Arabidopsis thaliana]
gi|17979085|gb|AAL49810.1| unknown protein [Arabidopsis
thaliana] gi|20465341|gb|AAM20074.1| unknown protein
[Arabidopsis thaliana]
Length = 485
Score = 90.1 bits (222), Expect = 2e-17
Identities = 41/54 (75%), Positives = 50/54 (91%)
Frame = -2
Query: 571 SLEGNIVATRRDANLRFYGDPYLTTSDILLGMVDRPKAAQPLYASLQALYSSLR 410
SLEGN+VATRRD N++FYGDPYL+TSDILLGMVD+PKAA+PLY +L+ LY+ LR
Sbjct: 431 SLEGNLVATRRDMNVKFYGDPYLSTSDILLGMVDQPKAAEPLYTALRELYARLR 484
>dbj|BAC16013.1| contains ESTs
AU062478(C11349),AU092192(C11349),
AU076219(R10022)~similar to senescence-associated
putative protein [Oryza sativa (japonica
cultivar-group)] gi|24060033|dbj|BAC21490.1| contains
ESTs
AU062478(C11349),AU092192(C11349),
AU076219(R10022)~similar to senescence-associated
putative protein [Oryza sativa (japonica
cultivar-group)]
Length = 461
Score = 78.6 bits (192), Expect = 5e-14
Identities = 35/55 (63%), Positives = 45/55 (81%)
Frame = -2
Query: 571 SLEGNIVATRRDANLRFYGDPYLTTSDILLGMVDRPKAAQPLYASLQALYSSLRY 407
SLEGN+V TR + NLRFYGD YLTT+DIL G V++P+AAQPLY++L L+S + Y
Sbjct: 407 SLEGNVVTTRSETNLRFYGDAYLTTTDILFGKVEKPRAAQPLYSALDDLFSKMVY 461
>ref|NP_174273.1| unknown protein; protein id: At1g29800.1 [Arabidopsis thaliana]
gi|25054840|gb|AAN71910.1| unknown protein [Arabidopsis
thaliana]
Length = 510
Score = 53.9 bits (128), Expect = 1e-06
Identities = 28/53 (52%), Positives = 32/53 (59%)
Frame = -2
Query: 571 SLEGNIVATRRDANLRFYGDPYLTTSDILLGMVDRPKAAQPLYASLQALYSSL 413
SLEG+I TR N RFYG L SDILLG + RP AA LY +L LY +
Sbjct: 442 SLEGSIFTTRTSENSRFYGSQSLAASDILLGSLPRPPAAAALYRALGDLYQKM 494
>ref|NP_593048.1| conserved hypothetical SH3 domain protein [Schizosaccharomyces
pombe] gi|11359034|pir||T50296 conserved hypothetical
SH3 domain protein [imported] - fission yeast
(Schizosaccharomyces pombe) gi|6562185|emb|CAB62422.1|
conserved hypothetical SH3 domain protein
[Schizosaccharomyces pombe]
Length = 430
Score = 40.0 bits (92), Expect = 0.021
Identities = 23/49 (46%), Positives = 30/49 (60%), Gaps = 1/49 (2%)
Frame = -2
Query: 571 SLEGNIVATRRDANLRFY-GDPYLTTSDILLGMVDRPKAAQPLYASLQA 428
SLEG+++ RRDAN Y GD +T +L G V +P AA PLY L +
Sbjct: 167 SLEGSVLVERRDANRSLYRGD--ITAKRLLSGQVAQPAAADPLYRVLNS 213
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,502,645
Number of Sequences: 1393205
Number of extensions: 11584594
Number of successful extensions: 28258
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28242
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
