Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003175A_C01 KMC003175A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD41336.1| oj991113_30.18 [Oryza sativa (japonica cultivar-... 147 1e-34
ref|NP_199119.1| putative protein; protein id: At5g43050.1 [Arab... 143 1e-33
ref|NP_053824.1| ORF20 [Porphyra purpurea] gi|1723324|sp|P51214|... 63 2e-09
ref|ZP_00072576.1| hypothetical protein [Trichodesmium erythraeu... 54 9e-07
ref|NP_440322.1| hypothetical protein [Synechocystis sp. PCC 680... 51 1e-05
>emb|CAD41336.1| oj991113_30.18 [Oryza sativa (japonica cultivar-group)]
Length = 190
Score = 147 bits (370), Expect = 1e-34
Identities = 73/75 (97%), Positives = 74/75 (98%)
Frame = -1
Query: 537 ISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTKFYYSRPKVTFPIALLNNFKM 358
ISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEYVTKFYYSRPKVTFP ALLNNFKM
Sbjct: 116 ISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTKFYYSRPKVTFPFALLNNFKM 175
Query: 357 GFTYGLFIDAFKLAS 313
GFTYGLFIDAFKLAS
Sbjct: 176 GFTYGLFIDAFKLAS 190
>ref|NP_199119.1| putative protein; protein id: At5g43050.1 [Arabidopsis thaliana]
gi|9757831|dbj|BAB08268.1| gene_id:MMG4.6~similar to
unknown protein~sp|P51214 [Arabidopsis thaliana]
Length = 158
Score = 143 bits (360), Expect = 1e-33
Identities = 72/75 (96%), Positives = 73/75 (97%)
Frame = -1
Query: 537 ISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTKFYYSRPKVTFPIALLNNFKM 358
ISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVT+FYYSR VTFPIALLNNFKM
Sbjct: 84 ISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRTTVTFPIALLNNFKM 143
Query: 357 GFTYGLFIDAFKLAS 313
GFTYGLFIDAFKLAS
Sbjct: 144 GFTYGLFIDAFKLAS 158
>ref|NP_053824.1| ORF20 [Porphyra purpurea] gi|1723324|sp|P51214|YC20_PORPU
HYPOTHETICAL 11.9 KD PROTEIN YCF20 (ORF108)
gi|2147520|pir||S73135 probable allophycocyanin linker
protein - red alga (Porphyra purpurea) chloroplast
gi|1276680|gb|AAC08100.1| hypothetical chloroplast ORF
20. [Porphyra purpurea]
Length = 108
Score = 63.2 bits (152), Expect = 2e-09
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = -1
Query: 537 ISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTKFYYS-RPKVTFPIALLNNFK 361
ISLL GF+++ +S G G +IAA L V E V+K YS + K I LLNN K
Sbjct: 33 ISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYSNKKKYGVRINLLNNLK 92
Query: 360 MGFTYGLFIDAFKLAS 313
+G TYGLF+DAFKL S
Sbjct: 93 IGITYGLFVDAFKLGS 108
>ref|ZP_00072576.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 110
Score = 54.3 bits (129), Expect = 9e-07
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Frame = -1
Query: 537 ISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTKFYYSRP-KVT--FPIALLNN 367
ISLL G + A +S G G DV+ + C+ +TE + Y R KV I +LN+
Sbjct: 33 ISLLFGNFAASAVSTIAGQEGYLDVLYTLACLFITEALNWLVYGRRGKVARFLIIDILNS 92
Query: 366 FKMGFTYGLFIDAFKLAS 313
K+GF YGLF++AFKL S
Sbjct: 93 LKIGFIYGLFLEAFKLGS 110
>ref|NP_440322.1| hypothetical protein [Synechocystis sp. PCC 6803]
gi|6136503|sp|P72983|Y20L_SYNY3 Ycf20-like protein
gi|7427620|pir||S74962 probable allophycocyanin linker
protein - Synechocystis sp. (strain PCC 6803)
gi|1652077|dbj|BAA17002.1| ORF_ID:sll1509~hypothetical
protein [Synechocystis sp. PCC 6803]
Length = 109
Score = 50.8 bits (120), Expect = 1e-05
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = -1
Query: 537 ISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTKFYYSR--PKVTFPIALLNNF 364
+S L GF+V ++ + G DV+ A +L E V +++Y R +LN F
Sbjct: 33 LSFLFGFFVGTAVATTAGQNSQWDVVCAAFILLFCELVNRWFYRRGVKMGDLQAEVLNIF 92
Query: 363 KMGFTYGLFIDAFKLAS 313
KMG +Y LF++AFKL S
Sbjct: 93 KMGVSYSLFLEAFKLGS 109
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,032,702
Number of Sequences: 1393205
Number of extensions: 8919854
Number of successful extensions: 20619
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 20041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20604
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
