Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003163A_C01 KMC003163A_c01
(1253 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P42054|PORI_PEA Outer plastidial membrane protein porin (Volt... 241 e-115
pir||T12558 porin - common ice plant gi|1724100|gb|AAB38498.1| p... 241 e-114
sp|P42055|POR4_SOLTU 34 kDa outer mitochondrial membrane protein... 243 e-114
gb|AAD38145.1|AF139498_1 porin [Prunus armeniaca] 245 e-113
sp|P42056|POR6_SOLTU 36 kDa outer mitochondrial membrane protein... 239 e-112
>sp|P42054|PORI_PEA Outer plastidial membrane protein porin (Voltage-dependent
anion-selective channel protein) (VDAC)
gi|480122|pir||S36454 porin por1 - garden pea
gi|396819|emb|CAA80988.1| Porin [Pisum sativum]
Length = 276
Score = 241 bits (615), Expect(2) = e-115
Identities = 118/156 (75%), Positives = 132/156 (83%)
Frame = -1
Query: 836 VGLTPNPIVNFSGVVGTNALAVGTDLSFDTKIGELTKFNAGLNFTKADLIASLTVNDKGD 657
VGL NPIVNFS V+GTNALA G D+SFDTK+GELTK NA +NF K DLI SLT+N+KGD
Sbjct: 121 VGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGD 180
Query: 656 ALNASYYHIVNPLTNTAFGAEVTHRFSTNENTLTLGTQHALDPLTSVKARVNNLGKANAL 477
L+ASYYH +NPL+NTA G +++HRFST ENT TLGTQHALDPLT+VK RV N GKA+AL
Sbjct: 181 LLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASAL 240
Query: 476 IQHEWRAKSFFTISGEVDTKAIEKSAKIGLGLALKP 369
IQHEWR KS TIS EVDTKAIEKSAKIGL LALKP
Sbjct: 241 IQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276
Score = 197 bits (502), Expect(2) = e-115
Identities = 99/129 (76%), Positives = 114/129 (87%)
Frame = -3
Query: 1200 MAKGPGLYTDIGKRARDLLFKDYHSDQKFTITTYSPTGVAITSSGIKKGELFVADVNTQL 1021
M KGPGLYTDIGK+ARDLL+KDYHSD+KFTI+TYSPTGVAITSSG KKGELF+ DVNTQL
Sbjct: 1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQL 60
Query: 1020 KNKNITTDLKVDTDSNLFTTVTVDEPAPGRSRLFLASAVPDQRSGKVELQYLHDYAGIST 841
KNKNITTD+KVDT+SNLFTT+TV+EPAPG + L+ VP+Q SGKVELQYLH+YAGIS+
Sbjct: 61 KNKNITTDIKVDTNSNLFTTITVNEPAPG-VKAILSFKVPEQTSGKVELQYLHEYAGISS 119
Query: 840 RRWVNTKSN 814
V K+N
Sbjct: 120 S--VGLKAN 126
>pir||T12558 porin - common ice plant gi|1724100|gb|AAB38498.1| porin
[Mesembryanthemum crystallinum]
Length = 276
Score = 241 bits (614), Expect(2) = e-114
Identities = 117/156 (75%), Positives = 132/156 (84%)
Frame = -1
Query: 836 VGLTPNPIVNFSGVVGTNALAVGTDLSFDTKIGELTKFNAGLNFTKADLIASLTVNDKGD 657
VGLT NPIVNFSGV+GTN LA GTD+SFD+K G TK NAGL+F ADLIASLT+NDKGD
Sbjct: 121 VGLTANPIVNFSGVLGTNLLAFGTDVSFDSKTGNFTKCNAGLSFANADLIASLTLNDKGD 180
Query: 656 ALNASYYHIVNPLTNTAFGAEVTHRFSTNENTLTLGTQHALDPLTSVKARVNNLGKANAL 477
LNASYYH ++PLT++A GAEV H FSTN+NT+TLG QHA+DPLT++K RVNN GKA AL
Sbjct: 181 TLNASYYHTISPLTSSAVGAEVAHSFSTNQNTITLGAQHAIDPLTNLKGRVNNFGKATAL 240
Query: 476 IQHEWRAKSFFTISGEVDTKAIEKSAKIGLGLALKP 369
IQHEWR KS T S EVDTKAIEKSAK+GL LALKP
Sbjct: 241 IQHEWRPKSLVTFSAEVDTKAIEKSAKVGLALALKP 276
Score = 195 bits (496), Expect(2) = e-114
Identities = 95/120 (79%), Positives = 109/120 (90%)
Frame = -3
Query: 1200 MAKGPGLYTDIGKRARDLLFKDYHSDQKFTITTYSPTGVAITSSGIKKGELFVADVNTQL 1021
MAKGPGLYTDIGK+ARDLL++DY +DQKF+ITTYSPTGVAITSSG KKG+LF+ADVNTQL
Sbjct: 1 MAKGPGLYTDIGKKARDLLYRDYQTDQKFSITTYSPTGVAITSSGTKKGDLFLADVNTQL 60
Query: 1020 KNKNITTDLKVDTDSNLFTTVTVDEPAPGRSRLFLASAVPDQRSGKVELQYLHDYAGIST 841
KNKN+TTD+KVDT+SNL TT+TVDE APG + L+ VPDQRSGK+ELQYLHDYAGI T
Sbjct: 61 KNKNVTTDIKVDTNSNLLTTITVDEAAPG-LKTILSFRVPDQRSGKLELQYLHDYAGICT 119
>sp|P42055|POR4_SOLTU 34 kDa outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) (POM 34) gi|629720|pir||S46936 34K porin - potato
gi|1076682|pir||A55364 porin (clone pPOM-34) - potato
mitochondrion gi|516166|emb|CAA56599.1| 34 kDA porin
[Solanum tuberosum]
Length = 276
Score = 243 bits (620), Expect(2) = e-114
Identities = 116/156 (74%), Positives = 135/156 (86%)
Frame = -1
Query: 836 VGLTPNPIVNFSGVVGTNALAVGTDLSFDTKIGELTKFNAGLNFTKADLIASLTVNDKGD 657
VGLT NPIVNFSGVVGTN +A+GTD+SFDTK G+ TK NAGL+FT ADL+ASL +N+KGD
Sbjct: 121 VGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGD 180
Query: 656 ALNASYYHIVNPLTNTAFGAEVTHRFSTNENTLTLGTQHALDPLTSVKARVNNLGKANAL 477
L ASYYH V+PLT+TA GAEV H FSTNEN +T+GTQH LDPLTSVKAR+NN GKA+AL
Sbjct: 181 NLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASAL 240
Query: 476 IQHEWRAKSFFTISGEVDTKAIEKSAKIGLGLALKP 369
+QHEWR KS FT+SGEVDTK+++K AK GL LALKP
Sbjct: 241 LQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276
Score = 192 bits (487), Expect(2) = e-114
Identities = 93/120 (77%), Positives = 107/120 (88%)
Frame = -3
Query: 1200 MAKGPGLYTDIGKRARDLLFKDYHSDQKFTITTYSPTGVAITSSGIKKGELFVADVNTQL 1021
M KGPGLYT+IGK+ARDLL+KDY SD KF+ITTYSPTGV ITSSG KKG+LF+ADVNTQL
Sbjct: 1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQL 60
Query: 1020 KNKNITTDLKVDTDSNLFTTVTVDEPAPGRSRLFLASAVPDQRSGKVELQYLHDYAGIST 841
KNKN+TTD+KVDT+SNLFTT+TVDE APG + L+ VPDQRSGK+E+QYLHDYAGI T
Sbjct: 61 KNKNVTTDIKVDTNSNLFTTITVDEAAPG-LKTILSFRVPDQRSGKLEVQYLHDYAGICT 119
>gb|AAD38145.1|AF139498_1 porin [Prunus armeniaca]
Length = 276
Score = 245 bits (625), Expect(2) = e-113
Identities = 120/156 (76%), Positives = 135/156 (85%)
Frame = -1
Query: 836 VGLTPNPIVNFSGVVGTNALAVGTDLSFDTKIGELTKFNAGLNFTKADLIASLTVNDKGD 657
+GLT NPIVNFSGVVG N L++GTDLSFDT G TK NAGLNFT DLIASL +NDK D
Sbjct: 121 IGLTANPIVNFSGVVGNNLLSLGTDLSFDTASGNFTKCNAGLNFTHTDLIASLILNDKAD 180
Query: 656 ALNASYYHIVNPLTNTAFGAEVTHRFSTNENTLTLGTQHALDPLTSVKARVNNLGKANAL 477
+ ASYYH V+PLTNTA GAE++H FS+NEN+LT+GTQHALDPLT+VK RVNN G+A+AL
Sbjct: 181 TVTASYYHTVSPLTNTAVGAELSHSFSSNENSLTIGTQHALDPLTTVKGRVNNYGRASAL 240
Query: 476 IQHEWRAKSFFTISGEVDTKAIEKSAKIGLGLALKP 369
IQHEWR KSFFTISGEVDT+AIEKSAKIGL LALKP
Sbjct: 241 IQHEWRPKSFFTISGEVDTRAIEKSAKIGLALALKP 276
Score = 186 bits (471), Expect(2) = e-113
Identities = 89/120 (74%), Positives = 106/120 (88%)
Frame = -3
Query: 1200 MAKGPGLYTDIGKRARDLLFKDYHSDQKFTITTYSPTGVAITSSGIKKGELFVADVNTQL 1021
M KGPGLY DIGK+ARDLL+KDY SD KFT+TTY+ TGVAI+S+GI+KG+L++ DV+TQL
Sbjct: 1 MVKGPGLYLDIGKKARDLLYKDYQSDHKFTVTTYTSTGVAISSTGIRKGDLYLGDVSTQL 60
Query: 1020 KNKNITTDLKVDTDSNLFTTVTVDEPAPGRSRLFLASAVPDQRSGKVELQYLHDYAGIST 841
KNKNITTD+KVDTDSNL TT+T+DEPAPG +F + VPDQRSGKVELQY H+YAGIST
Sbjct: 61 KNKNITTDVKVDTDSNLRTTITIDEPAPGLKAIF-SFIVPDQRSGKVELQYQHEYAGIST 119
>sp|P42056|POR6_SOLTU 36 kDa outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) (POM 36) gi|515360|emb|CAA56600.1| 36kDA porin II
[Solanum tuberosum]
Length = 276
Score = 239 bits (609), Expect(2) = e-112
Identities = 115/156 (73%), Positives = 135/156 (85%)
Frame = -1
Query: 836 VGLTPNPIVNFSGVVGTNALAVGTDLSFDTKIGELTKFNAGLNFTKADLIASLTVNDKGD 657
+GLT +P+VNFSGV G N +A+GTDLSFDT G TK NAGL+F+ +DLIASL +NDKGD
Sbjct: 121 IGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGD 180
Query: 656 ALNASYYHIVNPLTNTAFGAEVTHRFSTNENTLTLGTQHALDPLTSVKARVNNLGKANAL 477
++ASYYH V P+TNTA GAE+TH FS+NENTLT+GTQH LDPLT+VKARVN+ GKA+AL
Sbjct: 181 TVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASAL 240
Query: 476 IQHEWRAKSFFTISGEVDTKAIEKSAKIGLGLALKP 369
IQHEWR KS FTISGEVDT+AIEKSAKIGL +ALKP
Sbjct: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276
Score = 191 bits (485), Expect(2) = e-112
Identities = 91/120 (75%), Positives = 110/120 (90%)
Frame = -3
Query: 1200 MAKGPGLYTDIGKRARDLLFKDYHSDQKFTITTYSPTGVAITSSGIKKGELFVADVNTQL 1021
M KGPGLY+DIGK+ARDLL++DY SD KFT+TTYS TGVAIT+SG+KKGELF+ADV+TQL
Sbjct: 1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQL 60
Query: 1020 KNKNITTDLKVDTDSNLFTTVTVDEPAPGRSRLFLASAVPDQRSGKVELQYLHDYAGIST 841
KNKNITTD+KVDT+SN++TT+TVDEPAPG +F + VPDQ+SGKVELQYLH+YAGI+T
Sbjct: 61 KNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIF-SFVVPDQKSGKVELQYLHEYAGINT 119
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,078,277,199
Number of Sequences: 1393205
Number of extensions: 24722345
Number of successful extensions: 66940
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 62610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66724
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 79485316347
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
