Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003150A_C01 KMC003150A_c01
(643 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_623421.1| predicted P-loop-containing kinase [Thermoanaer... 33 3.2
gb|AAL71860.1| (p)ppGpp synthase/pyrophosphohydrolase [Borrelia ... 33 4.2
ref|NP_212332.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophospho... 33 4.2
ref|NP_505906.1| Astacin (Peptidase family M12A) family member [... 32 7.2
ref|NP_252600.1| conserved hypothetical protein [Pseudomonas aer... 32 7.2
>ref|NP_623421.1| predicted P-loop-containing kinase [Thermoanaerobacter
tengcongensis] gi|20516848|gb|AAM25025.1| predicted
P-loop-containing kinase [Thermoanaerobacter
tengcongensis]
Length = 284
Score = 33.1 bits (74), Expect = 3.2
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 142 LYFDNKLISS--YIISTQYLHHHKEKMSIYKRKWRERSIFLSSATYMIKYLVPH 297
L FD + + + YI + L + EK+ Y KW E FL MIK+L+P+
Sbjct: 181 LVFDVRFLPNPFYIDELRPLTGNDEKVKEYVMKWEEAKEFLKKLGDMIKFLIPY 234
>gb|AAL71860.1| (p)ppGpp synthase/pyrophosphohydrolase [Borrelia burgdorferi]
Length = 667
Score = 32.7 bits (73), Expect = 4.2
Identities = 21/62 (33%), Positives = 35/62 (55%), Gaps = 4/62 (6%)
Frame = +1
Query: 55 NAFNTYIPMYQKNGFSTLKRASIVLNFSHLY-FDNKLISSYIISTQYLHH---HKEKMSI 222
+ +TY+P+ ++ G S+LK L+F HLY D K I +++ T+ +K K+SI
Sbjct: 178 DCLSTYVPIAERLGISSLKTYLEDLSFKHLYPKDYKEIKNFLSETKIEREKKLYKGKLSI 237
Query: 223 YK 228
K
Sbjct: 238 EK 239
>ref|NP_212332.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (spoT)
[Borrelia burgdorferi] gi|6647844|sp|O51216|SPOT_BORBU
Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase
((ppGpp)ase) (Penta-phosphate
guanosine-3'-pyrophosphohydrolase)
gi|7435191|pir||F70124 guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase (spoT) homolog - Lyme disease
spirochete gi|2688094|gb|AAC66590.1|
guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
(spoT) [Borrelia burgdorferi B31]
gi|27802072|gb|AAL71859.1| (p)ppGpp
synthase/pyrophosphohydrolase [Borrelia burgdorferi]
Length = 667
Score = 32.7 bits (73), Expect = 4.2
Identities = 21/62 (33%), Positives = 35/62 (55%), Gaps = 4/62 (6%)
Frame = +1
Query: 55 NAFNTYIPMYQKNGFSTLKRASIVLNFSHLY-FDNKLISSYIISTQYLHH---HKEKMSI 222
+ +TY+P+ ++ G S+LK L+F HLY D K I +++ T+ +K K+SI
Sbjct: 178 DCLSTYVPIAERLGISSLKTYLEDLSFKHLYPKDYKEIKNFLSETKIEREKKLYKGKLSI 237
Query: 223 YK 228
K
Sbjct: 238 EK 239
>ref|NP_505906.1| Astacin (Peptidase family M12A) family member [Caenorhabditis
elegans] gi|7507683|pir||T24836 hypothetical protein
T11F9.3 - Caenorhabditis elegans
gi|3879688|emb|CAA98528.1| Hypothetical protein T11F9.3
[Caenorhabditis elegans]
Length = 323
Score = 32.0 bits (71), Expect = 7.2
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = -1
Query: 250 LTVLAIFFCKLTSFPYDGVDIVWKL---YMKRLVCCQNTNVKNSKR 122
+T L+ FFC+ T Y+GV++ +K + LVCC N N+ N R
Sbjct: 240 ITKLSGFFCQHTC-DYNGVELKYKTDRRIVSPLVCCDNDNLWNKTR 284
>ref|NP_252600.1| conserved hypothetical protein [Pseudomonas aeruginosa PA01]
gi|11348110|pir||G83157 conserved hypothetical protein
PA3911 [imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9950094|gb|AAG07298.1|AE004808_8 conserved
hypothetical protein [Pseudomonas aeruginosa PAO1]
Length = 171
Score = 32.0 bits (71), Expect = 7.2
Identities = 20/56 (35%), Positives = 27/56 (47%)
Frame = +2
Query: 329 QSTSSKAHDLGQRLSLNKQLRELGMGVWCTGGV*SRL*ATKNPSAYMLIRADWSLF 496
Q A DL + L ++R+LG+G WC V L + P A + IR DW F
Sbjct: 41 QPLEEGAFDLLEGRWLRLEVRDLGVG-WCVTRVPGGLRLVERPRASVTIRGDWRDF 95
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,067,690
Number of Sequences: 1393205
Number of extensions: 10805037
Number of successful extensions: 31840
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 31136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31836
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
