Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003148A_C01 KMC003148A_c01
(757 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC41886.1| unknown protein [Arabidopsis thaliana] gi|264499... 105 9e-22
gb|AAM61139.1| unknown [Arabidopsis thaliana] 100 4e-20
ref|NP_567407.1| putative protein; protein id: At4g13530.1, supp... 100 4e-20
gb|AAL67085.1| unknown protein [Arabidopsis thaliana] gi|2143619... 95 9e-19
pir||T06655 hypothetical protein T6G15.80 - Arabidopsis thaliana... 69 9e-11
>dbj|BAC41886.1| unknown protein [Arabidopsis thaliana] gi|26449949|dbj|BAC42095.1|
unknown protein [Arabidopsis thaliana]
Length = 325
Score = 105 bits (261), Expect = 9e-22
Identities = 55/104 (52%), Positives = 74/104 (70%)
Frame = -2
Query: 750 VWWRVPFQVLRYWVNPIPLSLPLCSVAAAAAFLGLLFLGRRLYKMKRKTQTMKLNLALDD 571
VWW++PF +L+Y V I P+ SV+ AAA +GL+ LGRRLY MK+K Q L + +DD
Sbjct: 227 VWWKMPFVLLKYSVFRIG---PVWSVSMAAAVMGLVLLGRRLYNMKKKAQRFHLKVTIDD 283
Query: 570 KKVSQLMVRVARLNEAFSVVRRVPVVRPTLPASTATLRPVMSMR 439
KK S++M + ARLNE F+ VRRVPV+RP LP+ A PV+S+R
Sbjct: 284 KKASRVMSQAARLNEVFTEVRRVPVIRPALPSPGAW--PVLSLR 325
>gb|AAM61139.1| unknown [Arabidopsis thaliana]
Length = 270
Score = 99.8 bits (247), Expect = 4e-20
Identities = 52/105 (49%), Positives = 75/105 (70%), Gaps = 1/105 (0%)
Frame = -2
Query: 750 VWWRVPFQVLRYWVNPIPLSLPLCSVAAAAAFLGLLFLGRRLYKMKRKTQTMKLNLALDD 571
VWW++P +VL+Y V I P+ S++ AAAF+G + LGRRLY MK+KT++++L + LDD
Sbjct: 172 VWWKIPIEVLKYCVLKIN---PIWSLSMAAAFVGFVMLGRRLYNMKKKTRSLQLKVLLDD 228
Query: 570 KKVSQLMVRVARLNEAFSVVRRVPVVRPTLPASTATLR-PVMSMR 439
KKV+ AR NEA SVV+RVP++RP LP+S + +MS+R
Sbjct: 229 KKVAN---HAARWNEAISVVKRVPIIRPALPSSVGMNQWSMMSLR 270
>ref|NP_567407.1| putative protein; protein id: At4g13530.1, supported by cDNA:
112156. [Arabidopsis thaliana]
Length = 270
Score = 99.8 bits (247), Expect = 4e-20
Identities = 52/105 (49%), Positives = 75/105 (70%), Gaps = 1/105 (0%)
Frame = -2
Query: 750 VWWRVPFQVLRYWVNPIPLSLPLCSVAAAAAFLGLLFLGRRLYKMKRKTQTMKLNLALDD 571
VWW++P +VL+Y V I P+ S++ AAAF+G + LGRRLY MK+KT++++L + LDD
Sbjct: 172 VWWKIPIEVLKYCVLKIN---PIWSLSMAAAFVGFVMLGRRLYNMKKKTRSLQLKVLLDD 228
Query: 570 KKVSQLMVRVARLNEAFSVVRRVPVVRPTLPASTATLR-PVMSMR 439
KKV+ AR NEA SVV+RVP++RP LP+S + +MS+R
Sbjct: 229 KKVAN---HAARWNEAISVVKRVPIIRPALPSSVGMNQWSMMSLR 270
>gb|AAL67085.1| unknown protein [Arabidopsis thaliana] gi|21436199|gb|AAM51387.1|
unknown protein [Arabidopsis thaliana]
Length = 269
Score = 95.1 bits (235), Expect = 9e-19
Identities = 50/105 (47%), Positives = 73/105 (68%), Gaps = 1/105 (0%)
Frame = -2
Query: 750 VWWRVPFQVLRYWVNPIPLSLPLCSVAAAAAFLGLLFLGRRLYKMKRKTQTMKLNLALDD 571
VWW++P +VL+Y V I P+ S++ AAAF+G + LGRRLY MK+KT++++L + LDD
Sbjct: 172 VWWKIPIEVLKYCVLKIN---PIWSLSMAAAFVGFVMLGRRLYNMKKKTRSLQLKVLLDD 228
Query: 570 KKVSQLMVRVARLNEAFSVVRRVPVVRPTLPASTATLR-PVMSMR 439
K + AR NEA SVV+RVP++RP LP+S + +MS+R
Sbjct: 229 KVAN----HAARWNEAISVVKRVPIIRPALPSSVGMNQWSMMSLR 269
>pir||T06655 hypothetical protein T6G15.80 - Arabidopsis thaliana
gi|4678379|emb|CAB41111.1| putative protein [Arabidopsis
thaliana] gi|7268056|emb|CAB78395.1| putative protein
[Arabidopsis thaliana]
Length = 263
Score = 68.6 bits (166), Expect = 9e-11
Identities = 32/64 (50%), Positives = 47/64 (73%)
Frame = -2
Query: 750 VWWRVPFQVLRYWVNPIPLSLPLCSVAAAAAFLGLLFLGRRLYKMKRKTQTMKLNLALDD 571
VWW++P +VL+Y V I P+ S++ AAAF+G + LGRRLY MK+KT++++L + LDD
Sbjct: 172 VWWKIPIEVLKYCVLKIN---PIWSLSMAAAFVGFVMLGRRLYNMKKKTRSLQLKVLLDD 228
Query: 570 KKVS 559
K S
Sbjct: 229 KVTS 232
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 644,965,039
Number of Sequences: 1393205
Number of extensions: 14011578
Number of successful extensions: 46022
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 42128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45492
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36877108757
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
