Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003144A_C01 KMC003144A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199853.1| putative protein; protein id: At5g50420.1, supp... 102 9e-28
gb|AAM66093.1| unknown [Arabidopsis thaliana] 102 9e-28
ref|NP_175780.1| hypothetical protein; protein id: At1g53770.1 [... 98 3e-27
gb|AAG51963.1|AC024260_1 hypothetical protein, 5' partial; 217-7... 98 3e-27
ref|NP_173170.1| hypothetical protein; protein id: At1g17270.1 [... 101 7e-27
>ref|NP_199853.1| putative protein; protein id: At5g50420.1, supported by cDNA: 7861.
[Arabidopsis thaliana] gi|9758924|dbj|BAB09461.1|
gb|AAD50008.1~gene_id:MXI22.14~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 566
Score = 102 bits (253), Expect(2) = 9e-28
Identities = 47/57 (82%), Positives = 53/57 (92%)
Frame = -3
Query: 425 KVEAMLDQTICAMSSVFIGASGSTFTGDILRLRKDWGSASLCDEYLCPGEEPNVVAE 255
+V+AMLD+TICAMSSVFIGASGSTFT DILRLRKDWG++S CDEYLC GEEPN +AE
Sbjct: 508 QVDAMLDKTICAMSSVFIGASGSTFTEDILRLRKDWGTSSTCDEYLCRGEEPNFIAE 564
Score = 42.7 bits (99), Expect(2) = 9e-28
Identities = 19/26 (73%), Positives = 19/26 (73%)
Frame = -1
Query: 502 KRPARNSVAKWDALLYRHHIEGDPHV 425
KRP RNS KWDALLYRH IE D V
Sbjct: 484 KRPPRNSAEKWDALLYRHGIEDDSQV 509
>gb|AAM66093.1| unknown [Arabidopsis thaliana]
Length = 566
Score = 102 bits (253), Expect(2) = 9e-28
Identities = 47/57 (82%), Positives = 53/57 (92%)
Frame = -3
Query: 425 KVEAMLDQTICAMSSVFIGASGSTFTGDILRLRKDWGSASLCDEYLCPGEEPNVVAE 255
+V+AMLD+TICAMSSVFIGASGSTFT DILRLRKDWG++S CDEYLC GEEPN +AE
Sbjct: 508 QVDAMLDKTICAMSSVFIGASGSTFTEDILRLRKDWGTSSTCDEYLCRGEEPNFIAE 564
Score = 42.7 bits (99), Expect(2) = 9e-28
Identities = 19/26 (73%), Positives = 19/26 (73%)
Frame = -1
Query: 502 KRPARNSVAKWDALLYRHHIEGDPHV 425
KRP RNS KWDALLYRH IE D V
Sbjct: 484 KRPPRNSAEKWDALLYRHGIEDDSQV 509
>ref|NP_175780.1| hypothetical protein; protein id: At1g53770.1 [Arabidopsis
thaliana]
Length = 563
Score = 98.2 bits (243), Expect(2) = 3e-27
Identities = 45/57 (78%), Positives = 52/57 (90%)
Frame = -3
Query: 425 KVEAMLDQTICAMSSVFIGASGSTFTGDILRLRKDWGSASLCDEYLCPGEEPNVVAE 255
+VEAMLD+TICA+SSVFIGASGSTFT DILRLRKDWG+AS CDEYLC E+PN +A+
Sbjct: 505 QVEAMLDKTICALSSVFIGASGSTFTEDILRLRKDWGTASECDEYLCANEQPNFIAD 561
Score = 44.7 bits (104), Expect(2) = 3e-27
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -1
Query: 502 KRPARNSVAKWDALLYRHHIEGDPHV 425
KRPAR+S KWDALLYRH +EGD V
Sbjct: 481 KRPARDSAEKWDALLYRHGLEGDSQV 506
>gb|AAG51963.1|AC024260_1 hypothetical protein, 5' partial; 217-725 [Arabidopsis thaliana]
Length = 141
Score = 98.2 bits (243), Expect(2) = 3e-27
Identities = 45/57 (78%), Positives = 52/57 (90%)
Frame = -3
Query: 425 KVEAMLDQTICAMSSVFIGASGSTFTGDILRLRKDWGSASLCDEYLCPGEEPNVVAE 255
+VEAMLD+TICA+SSVFIGASGSTFT DILRLRKDWG+AS CDEYLC E+PN +A+
Sbjct: 83 QVEAMLDKTICALSSVFIGASGSTFTEDILRLRKDWGTASECDEYLCANEQPNFIAD 139
Score = 44.7 bits (104), Expect(2) = 3e-27
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -1
Query: 502 KRPARNSVAKWDALLYRHHIEGDPHV 425
KRPAR+S KWDALLYRH +EGD V
Sbjct: 59 KRPARDSAEKWDALLYRHGLEGDSQV 84
>ref|NP_173170.1| hypothetical protein; protein id: At1g17270.1 [Arabidopsis
thaliana] gi|25373046|pir||A86309 F20D23.3 protein -
Arabidopsis thaliana gi|5734743|gb|AAD50008.1|AC007651_3
Hypothetical Protein [Arabidopsis thaliana]
Length = 594
Score = 101 bits (252), Expect(2) = 7e-27
Identities = 47/57 (82%), Positives = 53/57 (92%)
Frame = -3
Query: 425 KVEAMLDQTICAMSSVFIGASGSTFTGDILRLRKDWGSASLCDEYLCPGEEPNVVAE 255
+V AMLD+TICAMSSVFIGASGSTFT DILRLRKDWG++S+CDEYLC GEEPN +AE
Sbjct: 536 QVYAMLDKTICAMSSVFIGASGSTFTEDILRLRKDWGTSSMCDEYLCRGEEPNFIAE 592
Score = 40.0 bits (92), Expect(2) = 7e-27
Identities = 17/26 (65%), Positives = 19/26 (72%)
Frame = -1
Query: 502 KRPARNSVAKWDALLYRHHIEGDPHV 425
KRP +NS KWD+LLYRH IE D V
Sbjct: 512 KRPPQNSAEKWDSLLYRHGIEDDSQV 537
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,177,659
Number of Sequences: 1393205
Number of extensions: 9652106
Number of successful extensions: 21597
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 21060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21587
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
