Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003142A_C01 KMC003142A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00087324.1| hypothetical protein [Pseudomonas fluorescens... 31 10.0
ref|XP_235898.1| similar to olfactory receptor MOR149-3 [Mus mus... 31 10.0
>ref|ZP_00087324.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
Length = 570
Score = 31.2 bits (69), Expect = 10.0
Identities = 15/46 (32%), Positives = 26/46 (55%), Gaps = 1/46 (2%)
Frame = +2
Query: 257 GLSKYNACRGEVKCRSNWSLSPPVPVLHAYIK-ISEIKPKLEIKVA 391
GL Y RG + R NW L+P + V+ Y + ++++ L++ VA
Sbjct: 195 GLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMADLLEVLDVVVA 240
>ref|XP_235898.1| similar to olfactory receptor MOR149-3 [Mus musculus] [Rattus
norvegicus]
Length = 350
Score = 31.2 bits (69), Expect = 10.0
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -2
Query: 487 FSF*SLLFLYLFAFLGCLLLPSLINNQSH*LASYFNFQFWLNFTNFDICM 338
F F LF+YL LG LL+ + + SH ++F L+FT DIC+
Sbjct: 26 FIFGLFLFIYLVTILGNLLIIIAVISDSHLQTPMYHFLSKLSFT--DICL 73
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,043,985
Number of Sequences: 1393205
Number of extensions: 9204417
Number of successful extensions: 40068
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33688
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
