Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003141A_C01 KMC003141A_c01
(698 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO64200.1| putative E2, ubiquitin-conjugating enzyme UBC7 [A... 152 3e-36
ref|NP_568902.1| E2, ubiquitin-conjugating enzyme 7 (UBC7); prot... 152 3e-36
pir||S71209 ubiquitin-protein ligase (EC 6.3.2.19) UBC7 [similar... 152 3e-36
gb|AAL86003.1| putative E2, ubiquitin-conjugating enzyme UBC7 [A... 152 3e-36
pir||T01329 ubiquitin-conjugating enzyme E2 - maize gi|2641619|g... 152 6e-36
>gb|AAO64200.1| putative E2, ubiquitin-conjugating enzyme UBC7 [Arabidopsis
thaliana]
Length = 203
Score = 152 bits (385), Expect = 3e-36
Identities = 73/81 (90%), Positives = 76/81 (93%)
Frame = -2
Query: 697 DGRVRISILHPPGDDPNAYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEW 518
DGRV ISILHPPGDDP+ YELASERWTPVHTVESI+LSIISMLS PNDESPANVEAAKEW
Sbjct: 122 DGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEW 181
Query: 517 RDTRDEFKKKVGRCVRKSQEL 455
RD RDEFKKKV RCVRKSQE+
Sbjct: 182 RDKRDEFKKKVSRCVRKSQEM 202
>ref|NP_568902.1| E2, ubiquitin-conjugating enzyme 7 (UBC7); protein id: At5g59300.1
[Arabidopsis thaliana]
Length = 198
Score = 152 bits (385), Expect = 3e-36
Identities = 73/81 (90%), Positives = 76/81 (93%)
Frame = -2
Query: 697 DGRVRISILHPPGDDPNAYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEW 518
DGRV ISILHPPGDDP+ YELASERWTPVHTVESI+LSIISMLS PNDESPANVEAAKEW
Sbjct: 117 DGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEW 176
Query: 517 RDTRDEFKKKVGRCVRKSQEL 455
RD RDEFKKKV RCVRKSQE+
Sbjct: 177 RDKRDEFKKKVSRCVRKSQEM 197
>pir||S71209 ubiquitin-protein ligase (EC 6.3.2.19) UBC7 [similarity] -
Arabidopsis thaliana gi|992704|gb|AAC49321.1| UBC7
gi|9759251|dbj|BAB09775.1| ubiquitin-conjugating enzyme
UBC7 [Arabidopsis thaliana]
Length = 166
Score = 152 bits (385), Expect = 3e-36
Identities = 73/81 (90%), Positives = 76/81 (93%)
Frame = -2
Query: 697 DGRVRISILHPPGDDPNAYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEW 518
DGRV ISILHPPGDDP+ YELASERWTPVHTVESI+LSIISMLS PNDESPANVEAAKEW
Sbjct: 85 DGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEW 144
Query: 517 RDTRDEFKKKVGRCVRKSQEL 455
RD RDEFKKKV RCVRKSQE+
Sbjct: 145 RDKRDEFKKKVSRCVRKSQEM 165
>gb|AAL86003.1| putative E2, ubiquitin-conjugating enzyme UBC7 [Arabidopsis
thaliana]
Length = 187
Score = 152 bits (385), Expect = 3e-36
Identities = 73/81 (90%), Positives = 76/81 (93%)
Frame = -2
Query: 697 DGRVRISILHPPGDDPNAYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEW 518
DGRV ISILHPPGDDP+ YELASERWTPVHTVESI+LSIISMLS PNDESPANVEAAKEW
Sbjct: 106 DGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEW 165
Query: 517 RDTRDEFKKKVGRCVRKSQEL 455
RD RDEFKKKV RCVRKSQE+
Sbjct: 166 RDKRDEFKKKVSRCVRKSQEM 186
>pir||T01329 ubiquitin-conjugating enzyme E2 - maize gi|2641619|gb|AAC12662.1|
ubiquitin-conjugating enzyme protein E2 [Zea mays]
Length = 169
Score = 152 bits (383), Expect = 6e-36
Identities = 72/82 (87%), Positives = 78/82 (94%)
Frame = -2
Query: 697 DGRVRISILHPPGDDPNAYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEW 518
DGRV ISILHPPG+DPN YELASERWTPVHTVESIVLSIISMLSSPNDESPAN+EAAK+W
Sbjct: 88 DGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDW 147
Query: 517 RDTRDEFKKKVGRCVRKSQELL 452
R+ RDEFKKKV +CVRKSQE+L
Sbjct: 148 REKRDEFKKKVRQCVRKSQEML 169
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 574,362,489
Number of Sequences: 1393205
Number of extensions: 11811976
Number of successful extensions: 32383
Number of sequences better than 10.0: 367
Number of HSP's better than 10.0 without gapping: 31228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32357
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
