Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003140A_C01 KMC003140A_c01
(638 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44460.1| protein tyrosine phosphatase [Lycopersicon escul... 181 2e-51
gb|AAN62779.1| Unknown protein [Oryza sativa (japonica cultivar-... 150 1e-35
ref|NP_566960.1| putative protein; protein id: At3g52180.1, supp... 147 1e-34
gb|AAM61237.1| unknown [Arabidopsis thaliana] 147 1e-34
gb|AAL27495.1|AF439823_1 AT3g52180/F4F15_290 [Arabidopsis thalia... 144 8e-34
>emb|CAC44460.1| protein tyrosine phosphatase [Lycopersicon esculentum]
Length = 370
Score = 181 bits (458), Expect(2) = 2e-51
Identities = 85/127 (66%), Positives = 102/127 (79%), Gaps = 2/127 (1%)
Frame = -2
Query: 568 LSKKPVTLSWEHRNCSRVEISGLDIGWGQRMPLNFDDKRGSWFLNRELPEGRYEYKYIVD 389
L K PVTL+W NC+ VEISGLDIGWGQR+PL FD++RG W L ++L EG+YEYKYIVD
Sbjct: 242 LKKMPVTLTWHGDNCTTVEISGLDIGWGQRIPLKFDEERGLWTLQKDLHEGKYEYKYIVD 301
Query: 388 GEWTCNKDELVTSPNKDGHVNNFVQVLDGT--NGANASLRERLTGDDPDLTKDERLRIKE 215
GEW CN+ E +TSPNKDGHVNN+V+VLD N +A++R+RLTGDDPDLT DERL I+
Sbjct: 302 GEWICNEFEPITSPNKDGHVNNYVEVLDENPDNITSAAVRKRLTGDDPDLTSDERLIIER 361
Query: 214 FLEAFPD 194
FLEA D
Sbjct: 362 FLEAHAD 368
Score = 44.3 bits (103), Expect(2) = 2e-51
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -3
Query: 636 LLQSKRSCFPKLDAIKSATADI 571
LL SKRSCFPKLDAIKSATADI
Sbjct: 217 LLMSKRSCFPKLDAIKSATADI 238
>gb|AAN62779.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 281
Score = 150 bits (380), Expect = 1e-35
Identities = 77/155 (49%), Positives = 95/155 (60%), Gaps = 34/155 (21%)
Frame = -2
Query: 568 LSKKPVTLSWEHRNCSRVEISGLDIGWGQRMPLNFDDKRGSWFLNRELP----------- 422
LSK +TL WE +CS VEISGLD+GWGQ +PL ++ ++ +W+L RELP
Sbjct: 118 LSKNSITLKWESDSCSSVEISGLDVGWGQIIPLTYNKEKRAWYLERELPLLICHICYTVG 177
Query: 421 ----------------------EGRYEYKYIVDGEWTCNKDELVTSPNKDGHVNNFVQV- 311
EGRYEYKYIVDG+W CN +E T N DGHVNN+VQV
Sbjct: 178 LDFTVANFTLTFPYTFALCFPKEGRYEYKYIVDGKWVCNDNEKKTKANADGHVNNYVQVS 237
Query: 310 LDGTNGANASLRERLTGDDPDLTKDERLRIKEFLE 206
DGT+ LRERLTG +PDLTK+ERL I+E+LE
Sbjct: 238 RDGTSDEERELRERLTGQNPDLTKEERLMIREYLE 272
Score = 42.0 bits (97), Expect = 0.007
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = -3
Query: 636 LLQSKRSCFPKLDAIKSATADIASVRSLSLCHGNTEIALEW 514
LLQSKR+CFPKL+AIK ATADI + S I L+W
Sbjct: 93 LLQSKRACFPKLEAIKLATADILTGLS------KNSITLKW 127
>ref|NP_566960.1| putative protein; protein id: At3g52180.1, supported by cDNA:
114734., supported by cDNA: gi_16612245 [Arabidopsis
thaliana] gi|11544663|emb|CAC17593.1| PTPKIS1
[Arabidopsis thaliana] gi|11595504|emb|CAC18328.1|
PTPKIS1 protein [Arabidopsis thaliana]
Length = 379
Score = 147 bits (371), Expect = 1e-34
Identities = 71/154 (46%), Positives = 100/154 (64%), Gaps = 8/154 (5%)
Frame = -2
Query: 622 KVVLSKTGCHKKCNC*YC--------LSKKPVTLSWEHRNCSRVEISGLDIGWGQRMPLN 467
K+++SK C K + L +K VTL+ + + SRVEISGLDIGWGQR+PL
Sbjct: 226 KLLMSKRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLT 285
Query: 466 FDDKRGSWFLNRELPEGRYEYKYIVDGEWTCNKDELVTSPNKDGHVNNFVQVLDGTNGAN 287
D G W L RELPEG++EYKYI+DGEWT N+ E PNKDGH NN+ +V+D +
Sbjct: 286 LDKGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKVVDDPTSVD 345
Query: 286 ASLRERLTGDDPDLTKDERLRIKEFLEAFPDEDL 185
+ RERL+ +DP+L ++ER ++ +FLE + ++
Sbjct: 346 GTTRERLSSEDPELLEEERSKLIQFLETCSEAEV 379
Score = 40.0 bits (92), Expect = 0.026
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = -3
Query: 636 LLQSKRSCFPKLDAIKSATADI 571
LL SKRSCFPKLDAI++AT DI
Sbjct: 227 LLMSKRSCFPKLDAIRNATIDI 248
>gb|AAM61237.1| unknown [Arabidopsis thaliana]
Length = 379
Score = 147 bits (371), Expect = 1e-34
Identities = 71/154 (46%), Positives = 100/154 (64%), Gaps = 8/154 (5%)
Frame = -2
Query: 622 KVVLSKTGCHKKCNC*YC--------LSKKPVTLSWEHRNCSRVEISGLDIGWGQRMPLN 467
K+++SK C K + L +K VTL+ + + SRVEISGLDIGWGQR+PL
Sbjct: 226 KLLMSKRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLT 285
Query: 466 FDDKRGSWFLNRELPEGRYEYKYIVDGEWTCNKDELVTSPNKDGHVNNFVQVLDGTNGAN 287
D G W L RELPEG++EYKYI+DGEWT N+ E PNKDGH NN+ +V+D +
Sbjct: 286 LDKGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKVVDDPTSVD 345
Query: 286 ASLRERLTGDDPDLTKDERLRIKEFLEAFPDEDL 185
+ RERL+ +DP+L ++ER ++ +FLE + ++
Sbjct: 346 GTTRERLSSEDPELLEEERSKLIQFLETCSEAEV 379
Score = 40.0 bits (92), Expect = 0.026
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = -3
Query: 636 LLQSKRSCFPKLDAIKSATADI 571
LL SKRSCFPKLDAI++AT DI
Sbjct: 227 LLMSKRSCFPKLDAIRNATIDI 248
>gb|AAL27495.1|AF439823_1 AT3g52180/F4F15_290 [Arabidopsis thaliana]
gi|23505915|gb|AAN28817.1| At3g52180/F4F15_290
[Arabidopsis thaliana]
Length = 379
Score = 144 bits (364), Expect = 8e-34
Identities = 70/154 (45%), Positives = 99/154 (63%), Gaps = 8/154 (5%)
Frame = -2
Query: 622 KVVLSKTGCHKKCNC*YC--------LSKKPVTLSWEHRNCSRVEISGLDIGWGQRMPLN 467
K+++SK C K + L +K VTL+ + + SRVEISGLDIGWGQR+PL
Sbjct: 226 KLLMSKRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLT 285
Query: 466 FDDKRGSWFLNRELPEGRYEYKYIVDGEWTCNKDELVTSPNKDGHVNNFVQVLDGTNGAN 287
G W L RELPEG++EYKYI+DGEWT N+ E PNKDGH NN+ +V+D +
Sbjct: 286 LGKGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKVVDDPTSVD 345
Query: 286 ASLRERLTGDDPDLTKDERLRIKEFLEAFPDEDL 185
+ RERL+ +DP+L ++ER ++ +FLE + ++
Sbjct: 346 GTTRERLSSEDPELLEEERSKLIQFLETCSEAEV 379
Score = 40.0 bits (92), Expect = 0.026
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = -3
Query: 636 LLQSKRSCFPKLDAIKSATADI 571
LL SKRSCFPKLDAI++AT DI
Sbjct: 227 LLMSKRSCFPKLDAIRNATIDI 248
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,887,354
Number of Sequences: 1393205
Number of extensions: 11428666
Number of successful extensions: 33025
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 30944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33006
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
