Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003137A_C01 KMC003137A_c01
(633 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181270.1| unknown protein; protein id: At2g37330.1, suppo... 206 2e-52
dbj|BAA90494.1| similar to an Arabidopsis thialiana chromosome B... 191 7e-48
ref|NP_622009.1| predicted permease [Thermoanaerobacter tengcong... 103 1e-21
ref|NP_691368.1| hypothetical protein [Oceanobacillus iheyensis ... 93 3e-18
ref|NP_706384.1| putative metal resistance protein [Shigella fle... 91 1e-17
>ref|NP_181270.1| unknown protein; protein id: At2g37330.1, supported by cDNA:
gi_18252848 [Arabidopsis thaliana]
gi|25323037|pir||D84791 hypothetical protein At2g37330
[imported] - Arabidopsis thaliana
gi|4056487|gb|AAC98053.1| unknown protein [Arabidopsis
thaliana] gi|18252849|gb|AAL62351.1| unknown protein
[Arabidopsis thaliana] gi|21389691|gb|AAM48044.1|
unknown protein [Arabidopsis thaliana]
Length = 273
Score = 206 bits (525), Expect = 2e-52
Identities = 103/125 (82%), Positives = 119/125 (94%)
Frame = -1
Query: 633 SMTVTGVTMKRLRDDIKTQTNLVETALALGATPRQATHQQVKRALIIALSPVVDNTQTVG 454
+MTVTGVTMK+LRDDIK Q NLVETALALGATPRQAT QQVKRAL+I+LSPV+D+ +TVG
Sbjct: 148 AMTVTGVTMKQLRDDIKMQLNLVETALALGATPRQATLQQVKRALVISLSPVLDSCKTVG 207
Query: 453 LISLPGAMTGLIMGGASPLEAIQLQIVVMNMMIGAATMSSMMATYLCWPAFFTQAYQLET 274
LISLPGAMTG+IMGGASPLEAIQLQIVVMNMM+GAAT+SS+ +TYLCWP+FFT+AYQL+T
Sbjct: 208 LISLPGAMTGMIMGGASPLEAIQLQIVVMNMMVGAATVSSITSTYLCWPSFFTKAYQLQT 267
Query: 273 KVFSN 259
VFS+
Sbjct: 268 HVFSS 272
>dbj|BAA90494.1| similar to an Arabidopsis thialiana chromosome BAC genomic
sequence; unknown protein (AC005896) [Oryza sativa]
Length = 278
Score = 191 bits (485), Expect = 7e-48
Identities = 93/124 (75%), Positives = 114/124 (91%)
Frame = -1
Query: 633 SMTVTGVTMKRLRDDIKTQTNLVETALALGATPRQATHQQVKRALIIALSPVVDNTQTVG 454
+MTVTGVTMK+LR+D+ Q +VETALALGATPRQAT +QV+R+L+IALSPV+DN +TVG
Sbjct: 153 AMTVTGVTMKKLREDVGMQRGVVETALALGATPRQATARQVRRSLVIALSPVIDNAKTVG 212
Query: 453 LISLPGAMTGLIMGGASPLEAIQLQIVVMNMMIGAATMSSMMATYLCWPAFFTQAYQLET 274
LI+LPGAMTGLIMGGASPLEAIQLQIVVMNM++GA+T+SS+++TYLCWPAFFT A+QL
Sbjct: 213 LIALPGAMTGLIMGGASPLEAIQLQIVVMNMLMGASTVSSILSTYLCWPAFFTGAFQLND 272
Query: 273 KVFS 262
VF+
Sbjct: 273 AVFA 276
>ref|NP_622009.1| predicted permease [Thermoanaerobacter tengcongensis]
gi|20515305|gb|AAM23613.1| predicted permease
[Thermoanaerobacter tengcongensis]
Length = 250
Score = 103 bits (258), Expect = 1e-21
Identities = 48/118 (40%), Positives = 77/118 (64%)
Frame = -1
Query: 633 SMTVTGVTMKRLRDDIKTQTNLVETALALGATPRQATHQQVKRALIIALSPVVDNTQTVG 454
SM +G+++ RL+D+IK + +E LALGAT RQA + +K ++ + P VD+ +T+G
Sbjct: 129 SMVASGLSVSRLKDEIKNRQEEIEAYLALGATSRQAAQKVIKMSIKTGMMPTVDSMKTLG 188
Query: 453 LISLPGAMTGLIMGGASPLEAIQLQIVVMNMMIGAATMSSMMATYLCWPAFFTQAYQL 280
++ LPG MTGLI+GG P+ A++ QI+V M+ +S T+L + FFT+ +QL
Sbjct: 189 IVQLPGMMTGLILGGVDPITAVKYQIMVTFMLASTVAISCFTVTFLTYRTFFTKQHQL 246
>ref|NP_691368.1| hypothetical protein [Oceanobacillus iheyensis HTE831]
gi|22776126|dbj|BAC12403.1| hypothetical conserved
protein [Oceanobacillus iheyensis]
Length = 255
Score = 93.2 bits (230), Expect = 3e-18
Identities = 40/118 (33%), Positives = 77/118 (64%)
Frame = -1
Query: 633 SMTVTGVTMKRLRDDIKTQTNLVETALALGATPRQATHQQVKRALIIALSPVVDNTQTVG 454
SM ++ + + R +I+T+ N E L+LG TPRQA H + ++ +L P +++ +T+G
Sbjct: 129 SMVLSILFLNRFTSEIETRENETELILSLGGTPRQAIHTSLIHSIKASLIPTIESQKTIG 188
Query: 453 LISLPGAMTGLIMGGASPLEAIQLQIVVMNMMIGAATMSSMMATYLCWPAFFTQAYQL 280
L+ LPG M+G I+ GA P++A+Q Q++++ +++ A ++S+M +L +P F + Q+
Sbjct: 189 LVQLPGMMSGQIIAGADPIQAVQFQLLILFLLLTTAAVTSIMLGFLSYPTLFNERMQM 246
>ref|NP_706384.1| putative metal resistance protein [Shigella flexneri 2a str. 301]
gi|24050672|gb|AAN42091.1|AE015076_2 putative metal
resistance protein [Shigella flexneri 2a str. 301]
Length = 268
Score = 91.3 bits (225), Expect = 1e-17
Identities = 44/118 (37%), Positives = 76/118 (64%)
Frame = -1
Query: 633 SMTVTGVTMKRLRDDIKTQTNLVETALALGATPRQATHQQVKRALIIALSPVVDNTQTVG 454
+M G+ L + ++ ++ L+LGATP+QA+ ++ ++ AL P VD+ +TVG
Sbjct: 143 AMVAVGLCYNNLGQRVISEQQQIQEKLSLGATPKQASAILIRDSIRAALIPTVDSAKTVG 202
Query: 453 LISLPGAMTGLIMGGASPLEAIQLQIVVMNMMIGAATMSSMMATYLCWPAFFTQAYQL 280
L+SLPG M+GLI G P++AI+ QI+V M++ A++S+++A YL + F+ +QL
Sbjct: 203 LVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLTYRKFYNSRHQL 260
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,193,612
Number of Sequences: 1393205
Number of extensions: 12297989
Number of successful extensions: 31060
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 29416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30971
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
