Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003136A_C03 KMC003136A_c03
(696 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB40967.1| UDP-D-glucuronate carboxy-lyase [Pisum sativum] 220 2e-59
pir||T51252 dTDPglucose 4,6-dehydratase (EC 4.2.1.46) [imported]... 219 3e-58
ref|NP_190228.1| dTDP-glucose 4-6-dehydratases-like protein; pro... 212 2e-57
ref|NP_200737.1| dTDP-glucose 4-6-dehydratase - like protein; pr... 212 3e-56
gb|AAK53026.1|AF375442_1 AT5g59290/mnc17_180 [Arabidopsis thalia... 212 3e-56
>dbj|BAB40967.1| UDP-D-glucuronate carboxy-lyase [Pisum sativum]
Length = 346
Score = 220 bits (560), Expect(2) = 2e-59
Identities = 108/116 (93%), Positives = 112/116 (96%)
Frame = -2
Query: 695 PRMNIDDGRVVSNFIAQAIRNEPLTVQSPGTQTRSFCYVSDLVDGLIRLMDGSDTGPINL 516
PRMNIDDGRVVSNFIAQA+R+E LTVQSPGTQTRSFCYVSDLVDGLIRLM GSDTGPINL
Sbjct: 209 PRMNIDDGRVVSNFIAQALRDESLTVQSPGTQTRSFCYVSDLVDGLIRLMGGSDTGPINL 268
Query: 515 GNPGEFTMLELAETVKELINPNVEIKIVENTPDDPRQRKPIITKAKELLGWEPKAE 348
GNPGEFTMLELAETVKELINPNVEIKIVENTPDDPRQRKP ITKA+ELLGWEPK +
Sbjct: 269 GNPGEFTMLELAETVKELINPNVEIKIVENTPDDPRQRKPDITKAQELLGWEPKVK 324
Score = 31.6 bits (70), Expect(2) = 2e-59
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -1
Query: 330 PFMEEDFRLRLGVEKN 283
P ME DFRLRLG+EKN
Sbjct: 330 PLMEGDFRLRLGIEKN 345
>pir||T51252 dTDPglucose 4,6-dehydratase (EC 4.2.1.46) [imported] - chickpea
gi|6469141|emb|CAB61752.1| dTDP-glucose 4-6-dehydratase
[Cicer arietinum]
Length = 346
Score = 219 bits (558), Expect(2) = 3e-58
Identities = 108/116 (93%), Positives = 110/116 (94%)
Frame = -2
Query: 695 PRMNIDDGRVVSNFIAQAIRNEPLTVQSPGTQTRSFCYVSDLVDGLIRLMDGSDTGPINL 516
PRMNIDDGRVVSNFIAQA+R E LTVQSPGTQTRSFCYVSDLVDGLIRLM GSDTGPINL
Sbjct: 209 PRMNIDDGRVVSNFIAQALRGESLTVQSPGTQTRSFCYVSDLVDGLIRLMGGSDTGPINL 268
Query: 515 GNPGEFTMLELAETVKELINPNVEIKIVENTPDDPRQRKPIITKAKELLGWEPKAE 348
GNPGEFTMLELAETVKELINPNVEIK VENTPDDPRQRKP ITKAKELLGWEPK +
Sbjct: 269 GNPGEFTMLELAETVKELINPNVEIKTVENTPDDPRQRKPDITKAKELLGWEPKVK 324
Score = 28.5 bits (62), Expect(2) = 3e-58
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -1
Query: 330 PFMEEDFRLRLGVEK 286
P ME DFRLRLGV+K
Sbjct: 330 PLMEGDFRLRLGVDK 344
>ref|NP_190228.1| dTDP-glucose 4-6-dehydratases-like protein; protein id:
At3g46440.1, supported by cDNA: 31901., supported by
cDNA: gi_18175745, supported by cDNA: gi_20465506
[Arabidopsis thaliana] gi|11270114|pir||T45701
dTDP-glucose 4-6-dehydratases-like protein - Arabidopsis
thaliana gi|6522623|emb|CAB62035.1| dTDP-glucose
4-6-dehydratases-like protein [Arabidopsis thaliana]
gi|18175746|gb|AAL59920.1| putative dTDP-glucose
4-6-dehydratase [Arabidopsis thaliana]
gi|20465507|gb|AAM20236.1| putative dTDP-glucose
4-6-dehydratases [Arabidopsis thaliana]
gi|21592727|gb|AAM64676.1| dTDP-glucose
4-6-dehydratases-like protein [Arabidopsis thaliana]
Length = 341
Score = 212 bits (539), Expect(2) = 2e-57
Identities = 102/122 (83%), Positives = 113/122 (92%), Gaps = 1/122 (0%)
Frame = -2
Query: 695 PRMNIDDGRVVSNFIAQAIRNEPLTVQSPGTQTRSFCYVSDLVDGLIRLMDGSDTGPINL 516
PRMNIDDGRVVSNFIAQA+R E LTVQ PGTQTRSFCYVSD+VDGL+RLM+G DTGPIN+
Sbjct: 205 PRMNIDDGRVVSNFIAQALRGEALTVQKPGTQTRSFCYVSDMVDGLMRLMEGDDTGPINI 264
Query: 515 GNPGEFTMLELAETVKELINPNVEIKIVENTPDDPRQRKPIITKAKELLGWEPKAE-TEG 339
GNPGEFTM+ELAETVKELINP++EIK+VENTPDDPRQRKP ITKAKE+LGWEPK + EG
Sbjct: 265 GNPGEFTMVELAETVKELINPSIEIKMVENTPDDPRQRKPDITKAKEVLGWEPKVKLREG 324
Query: 338 WP 333
P
Sbjct: 325 LP 326
Score = 32.7 bits (73), Expect(2) = 2e-57
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -1
Query: 330 PFMEEDFRLRLGVEKN 283
P MEEDFRLRLGV KN
Sbjct: 326 PLMEEDFRLRLGVHKN 341
>ref|NP_200737.1| dTDP-glucose 4-6-dehydratase - like protein; protein id:
At5g59290.1, supported by cDNA: 6701., supported by
cDNA: gi_14030702, supported by cDNA: gi_14595665,
supported by cDNA: gi_20334715 [Arabidopsis thaliana]
gi|9759250|dbj|BAB09774.1| dTDP-glucose 4-6-dehydratase
[Arabidopsis thaliana]
gi|14595666|gb|AAK70882.1|AF387789_1 UDP-glucuronic acid
decarboxylase [Arabidopsis thaliana]
gi|21594196|gb|AAM65979.1| dTDP-glucose
4-6-dehydratase-like protein [Arabidopsis thaliana]
Length = 342
Score = 212 bits (539), Expect(2) = 3e-56
Identities = 102/122 (83%), Positives = 114/122 (92%), Gaps = 1/122 (0%)
Frame = -2
Query: 695 PRMNIDDGRVVSNFIAQAIRNEPLTVQSPGTQTRSFCYVSDLVDGLIRLMDGSDTGPINL 516
PRMNIDDGRVVSNFIAQA+R E LTVQ PGTQTRSFCYVSD+VDGLIRLM+G+DTGPIN+
Sbjct: 206 PRMNIDDGRVVSNFIAQALRGEALTVQKPGTQTRSFCYVSDMVDGLIRLMEGNDTGPINI 265
Query: 515 GNPGEFTMLELAETVKELINPNVEIKIVENTPDDPRQRKPIITKAKELLGWEPKAE-TEG 339
GNPGEFTM+ELAETVKELINP++EIK+VENTPDDPRQRKP I+KAKE+LGWEPK + EG
Sbjct: 266 GNPGEFTMVELAETVKELINPSIEIKMVENTPDDPRQRKPDISKAKEVLGWEPKVKLREG 325
Query: 338 WP 333
P
Sbjct: 326 LP 327
Score = 28.9 bits (63), Expect(2) = 3e-56
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1
Query: 330 PFMEEDFRLRLGVEKN 283
P MEEDFRLRL V +N
Sbjct: 327 PLMEEDFRLRLNVPRN 342
>gb|AAK53026.1|AF375442_1 AT5g59290/mnc17_180 [Arabidopsis thaliana]
gi|20334716|gb|AAM16219.1| AT5g59290/mnc17_180
[Arabidopsis thaliana]
Length = 342
Score = 212 bits (539), Expect(2) = 3e-56
Identities = 102/122 (83%), Positives = 114/122 (92%), Gaps = 1/122 (0%)
Frame = -2
Query: 695 PRMNIDDGRVVSNFIAQAIRNEPLTVQSPGTQTRSFCYVSDLVDGLIRLMDGSDTGPINL 516
PRMNIDDGRVVSNFIAQA+R E LTVQ PGTQTRSFCYVSD+VDGLIRLM+G+DTGPIN+
Sbjct: 206 PRMNIDDGRVVSNFIAQALRGEALTVQKPGTQTRSFCYVSDMVDGLIRLMEGNDTGPINI 265
Query: 515 GNPGEFTMLELAETVKELINPNVEIKIVENTPDDPRQRKPIITKAKELLGWEPKAE-TEG 339
GNPGEFTM+ELAETVKELINP++EIK+VENTPDDPRQRKP I+KAKE+LGWEPK + EG
Sbjct: 266 GNPGEFTMVELAETVKELINPSIEIKMVENTPDDPRQRKPDISKAKEVLGWEPKVKLREG 325
Query: 338 WP 333
P
Sbjct: 326 LP 327
Score = 28.9 bits (63), Expect(2) = 3e-56
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1
Query: 330 PFMEEDFRLRLGVEKN 283
P MEEDFRLRL V +N
Sbjct: 327 PLMEEDFRLRLNVPRN 342
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 611,935,445
Number of Sequences: 1393205
Number of extensions: 13561014
Number of successful extensions: 33888
Number of sequences better than 10.0: 485
Number of HSP's better than 10.0 without gapping: 32624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33782
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
