Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003135A_C01 KMC003135A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T04442 ABC-type transport protein T18B16.180 - Arabidopsis ... 82 5e-15
gb|AAM19067.1| RNase L inhibitor-like protein [Oryza sativa (jap... 82 5e-15
ref|NP_193656.2| RNase L inhibitor protein, putative; protein id... 82 5e-15
gb|AAO32059.1| RNase L inhibitor-like protein [Brassica rapa sub... 82 5e-15
gb|AAL26702.1| 68 kDa protein HP68 [Triticum aestivum] 82 6e-15
>pir||T04442 ABC-type transport protein T18B16.180 - Arabidopsis thaliana
gi|2828296|emb|CAA16710.1| RNase L inhibitor-like
protein [Arabidopsis thaliana]
gi|7268716|emb|CAB78923.1| RNase L inhibitor-like
protein [Arabidopsis thaliana]
Length = 600
Score = 82.0 bits (201), Expect = 5e-15
Identities = 39/43 (90%), Positives = 42/43 (96%)
Frame = -2
Query: 573 FLSHLDITFRRDPTNFRPRINKIDSTKDREQKSAGSYYYYLDD 445
FLSHL+ITFRRDPTNFRPRINK++STKDREQKSAGS YYYLDD
Sbjct: 559 FLSHLNITFRRDPTNFRPRINKLESTKDREQKSAGS-YYYLDD 600
>gb|AAM19067.1| RNase L inhibitor-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 604
Score = 82.0 bits (201), Expect = 5e-15
Identities = 39/43 (90%), Positives = 41/43 (94%)
Frame = -2
Query: 573 FLSHLDITFRRDPTNFRPRINKIDSTKDREQKSAGSYYYYLDD 445
FLSHLDITFRRDP N+RPRINK+DSTKDREQKSAGS YYYLDD
Sbjct: 563 FLSHLDITFRRDPPNYRPRINKLDSTKDREQKSAGS-YYYLDD 604
>ref|NP_193656.2| RNase L inhibitor protein, putative; protein id: At4g19210.1,
supported by cDNA: gi_20466461 [Arabidopsis thaliana]
gi|20466462|gb|AAM20548.1| RNase L inhibitor-like
protein [Arabidopsis thaliana]
gi|23198180|gb|AAN15617.1| RNase L inhibitor-like
protein [Arabidopsis thaliana]
Length = 605
Score = 82.0 bits (201), Expect = 5e-15
Identities = 39/43 (90%), Positives = 42/43 (96%)
Frame = -2
Query: 573 FLSHLDITFRRDPTNFRPRINKIDSTKDREQKSAGSYYYYLDD 445
FLSHL+ITFRRDPTNFRPRINK++STKDREQKSAGS YYYLDD
Sbjct: 564 FLSHLNITFRRDPTNFRPRINKLESTKDREQKSAGS-YYYLDD 605
>gb|AAO32059.1| RNase L inhibitor-like protein [Brassica rapa subsp. pekinensis]
Length = 176
Score = 82.0 bits (201), Expect = 5e-15
Identities = 39/43 (90%), Positives = 42/43 (96%)
Frame = -2
Query: 573 FLSHLDITFRRDPTNFRPRINKIDSTKDREQKSAGSYYYYLDD 445
FLSHL+ITFRRDPTNFRPRINK++STKDREQKSAGS YYYLDD
Sbjct: 135 FLSHLNITFRRDPTNFRPRINKLESTKDREQKSAGS-YYYLDD 176
>gb|AAL26702.1| 68 kDa protein HP68 [Triticum aestivum]
Length = 604
Score = 81.6 bits (200), Expect = 6e-15
Identities = 38/43 (88%), Positives = 42/43 (97%)
Frame = -2
Query: 573 FLSHLDITFRRDPTNFRPRINKIDSTKDREQKSAGSYYYYLDD 445
FLSHLDITFRRDPTN+RPRINK++STKDREQK+AGS YYYLDD
Sbjct: 563 FLSHLDITFRRDPTNYRPRINKLESTKDREQKNAGS-YYYLDD 604
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,595,301
Number of Sequences: 1393205
Number of extensions: 9274728
Number of successful extensions: 19208
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 18738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19203
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
