Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003134A_C03 KMC003134A_c03
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565054.1| expressed protein; protein id: At1g73060.1, sup... 172 2e-42
gb|AAM61432.1| unknown [Arabidopsis thaliana] 172 2e-42
pir||B96756 hypothetical protein F3N23.26 [imported] - Arabidops... 60 8e-12
sp|Q9DG99|CGB2_ORYJA G2/mitotic-specific cyclin B2 gi|11034752|d... 33 3.7
ref|NP_418963.1| tetrapyrrole methylase family protein [Caulobac... 32 6.3
>ref|NP_565054.1| expressed protein; protein id: At1g73060.1, supported by cDNA:
119910. [Arabidopsis thaliana]
gi|25082946|gb|AAN72020.1| Unknown protein [Arabidopsis
thaliana]
Length = 358
Score = 172 bits (437), Expect = 2e-42
Identities = 78/99 (78%), Positives = 92/99 (92%)
Frame = -2
Query: 598 RDYSKTVAIAPYIVNYSGAVFRQYLGPWQVMLKQADGSFACIAESATRFTLGEAKEELLR 419
R+YSKTVA+AP+++NY+GA+FRQY GPWQVMLKQ DGSFAC+AES TRFTLGE KEELL+
Sbjct: 260 REYSKTVAVAPFVLNYNGALFRQYPGPWQVMLKQTDGSFACVAESPTRFTLGETKEELLQ 319
Query: 418 VLGLQEEEGSSLQFLRRGYKASTWWEEDSDLELSSAWRN 302
VLGLQEE+GSSL+FLRRGYK++TWWEED +LE SS WRN
Sbjct: 320 VLGLQEEKGSSLEFLRRGYKSATWWEEDVELEASSNWRN 358
>gb|AAM61432.1| unknown [Arabidopsis thaliana]
Length = 358
Score = 172 bits (437), Expect = 2e-42
Identities = 78/99 (78%), Positives = 92/99 (92%)
Frame = -2
Query: 598 RDYSKTVAIAPYIVNYSGAVFRQYLGPWQVMLKQADGSFACIAESATRFTLGEAKEELLR 419
R+YSKTVA+AP+++NY+GA+FRQY GPWQVMLKQ DGSFAC+AES TRFTLGE KEELL+
Sbjct: 260 REYSKTVAVAPFVLNYNGALFRQYPGPWQVMLKQTDGSFACVAESPTRFTLGETKEELLQ 319
Query: 418 VLGLQEEEGSSLQFLRRGYKASTWWEEDSDLELSSAWRN 302
VLGLQEE+GSSL+FLRRGYK++TWWEED +LE SS WRN
Sbjct: 320 VLGLQEEKGSSLEFLRRGYKSATWWEEDVELEASSNWRN 358
>pir||B96756 hypothetical protein F3N23.26 [imported] - Arabidopsis thaliana
gi|5903095|gb|AAD55653.1|AC008017_26 Unknown protein
[Arabidopsis thaliana]
Length = 399
Score = 60.5 bits (145), Expect(2) = 8e-12
Identities = 31/61 (50%), Positives = 41/61 (66%), Gaps = 8/61 (13%)
Frame = -2
Query: 598 RDYSKT--VAIAPYIVN------YSGAVFRQYLGPWQVMLKQADGSFACIAESATRFTLG 443
R+YSK + + ++N Y ++++ GPWQVMLKQ DGSFAC+AES TRFTLG
Sbjct: 229 REYSKICIIILNSSVLNMRECFLYPYLIWKKNAGPWQVMLKQTDGSFACVAESPTRFTLG 288
Query: 442 E 440
E
Sbjct: 289 E 289
Score = 31.2 bits (69), Expect(2) = 8e-12
Identities = 14/36 (38%), Positives = 22/36 (60%)
Frame = -3
Query: 441 KPKKNC*ESWDFKKKREALYNFFEEATRQARGGKRI 334
K +K+C WD+KK++EA + T + GGKR+
Sbjct: 311 KRRKSCYRFWDYKKRKEAHSSSCAGDTSRQLGGKRM 346
>sp|Q9DG99|CGB2_ORYJA G2/mitotic-specific cyclin B2 gi|11034752|dbj|BAB17222.1|
cyclin-dependent kinase regulatory subunit cyclin B2
[Oryzias javanicus]
Length = 382
Score = 32.7 bits (73), Expect = 3.7
Identities = 22/57 (38%), Positives = 31/57 (53%), Gaps = 1/57 (1%)
Frame = -2
Query: 490 GSFACIAESA-TRFTLGEAKEELLRVLGLQEEEGSSLQFLRRGYKASTWWEEDSDLE 323
G FA I + A T+F + E ++ +LR LG Q L FLRR K + D+D+E
Sbjct: 216 GDFAYITDDAFTKFQIVEMEQVILRSLGFQLGRPLPLHFLRRASKVA-----DADVE 267
>ref|NP_418963.1| tetrapyrrole methylase family protein [Caulobacter crescentus CB15]
gi|25318864|pir||G87266 tetrapyrrole methylase family
protein [imported] - Caulobacter crescentus
gi|13421255|gb|AAK22131.1| tetrapyrrole methylase family
protein [Caulobacter crescentus CB15]
Length = 290
Score = 32.0 bits (71), Expect = 6.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 526 LGPWQVMLKQADGSFACIAESATRFTLGEAKEELLRVLGLQEEE 395
+GP + AD + A + E+ R LGEA E+ + LGL ++
Sbjct: 235 VGPGAEKVASADDAEAALREAMARLPLGEAASEVAKALGLSRKD 278
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,181,719
Number of Sequences: 1393205
Number of extensions: 11410067
Number of successful extensions: 25276
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25273
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
