Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003133A_C02 KMC003133A_c02
(496 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA17840.1| Bromodomain, putative [Plasmodium yoelii yoelii] 39 0.041
ref|NP_312899.1| hypothetical protein [Escherichia coli O157:H7]... 32 3.0
ref|NP_418378.1| orf, hypothetical protein [Escherichia coli K12... 32 3.0
ref|NP_709747.1| orf, conserved hypothetical protein [Shigella f... 32 3.0
ref|NP_290580.1| orf, hypothetical protein [Escherichia coli O15... 32 3.0
>gb|EAA17840.1| Bromodomain, putative [Plasmodium yoelii yoelii]
Length = 4805
Score = 38.5 bits (88), Expect = 0.041
Identities = 24/69 (34%), Positives = 37/69 (52%)
Frame = +2
Query: 62 LNMTKLLN*IYRVSLLSSYLSSHNTSSSIYVSTPSNSAKKVKKN*QRLLVCSFS*L*SMN 241
LN + + N IYR S LSS L SH S Y S+ +N + +++N + + S+N
Sbjct: 3335 LNESAINNKIYRHSSLSSNLDSHKNSYFFYNSSNNNLSNNIRRNSNNYGSLNCKTISSIN 3394
Query: 242 KYNYF*TNN 268
+N F TN+
Sbjct: 3395 MFNKFKTNS 3403
>ref|NP_312899.1| hypothetical protein [Escherichia coli O157:H7]
gi|25391784|pir||H91237 hypothetical protein ECs4872
[imported] - Escherichia coli (strain O157:H7,
substrain RIMD 0509952) gi|13364348|dbj|BAB38295.1|
hypothetical protein [Escherichia coli O157:H7]
Length = 312
Score = 32.3 bits (72), Expect = 3.0
Identities = 18/53 (33%), Positives = 26/53 (48%)
Frame = -3
Query: 455 WWGLACHVEVANYWRWLPLAVVLLNLTPPAPLINMLYLVVCSLLFRSWWVPGD 297
+W LA +A W VL NL ++ L + VC +LF SWW+ G+
Sbjct: 228 FWALAYSAILATALAWSLWLFVLKNLPASIASLSTLAVPVCGVLF-SWWLLGE 279
>ref|NP_418378.1| orf, hypothetical protein [Escherichia coli K12]
gi|2121045|pir||I78664 hypothetical 34.1K protein
(katg-glda intergenic region) - Escherichia coli (strain
K-12) gi|409786|gb|AAC43049.1| similar to Desulfurolobus
ambivalens hypoth. 28.3 kDa protein in sor 3' region
gi|1790379|gb|AAC76925.1| orf, hypothetical protein
[Escherichia coli K12]
Length = 312
Score = 32.3 bits (72), Expect = 3.0
Identities = 18/53 (33%), Positives = 26/53 (48%)
Frame = -3
Query: 455 WWGLACHVEVANYWRWLPLAVVLLNLTPPAPLINMLYLVVCSLLFRSWWVPGD 297
+W LA +A W VL NL ++ L + VC +LF SWW+ G+
Sbjct: 228 FWALAYSAILATALAWSLWLFVLKNLPASIASLSTLAVPVCGVLF-SWWLLGE 279
>ref|NP_709747.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|24054525|gb|AAN45454.1|AE015409_2 orf, conserved
hypothetical protein [Shigella flexneri 2a str. 301]
Length = 312
Score = 32.3 bits (72), Expect = 3.0
Identities = 18/53 (33%), Positives = 26/53 (48%)
Frame = -3
Query: 455 WWGLACHVEVANYWRWLPLAVVLLNLTPPAPLINMLYLVVCSLLFRSWWVPGD 297
+W LA +A W VL NL ++ L + VC +LF SWW+ G+
Sbjct: 228 FWALAYSAILATALAWSLWLFVLKNLPASIASLSTLAVPVCGVLF-SWWLLGE 279
>ref|NP_290580.1| orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
gi|25497993|pir||D86085 hypothetical protein yijE
[imported] - Escherichia coli (strain O157:H7,
substrain EDL933) gi|12518858|gb|AAG59144.1|AE005625_7
orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
Length = 312
Score = 32.3 bits (72), Expect = 3.0
Identities = 18/53 (33%), Positives = 26/53 (48%)
Frame = -3
Query: 455 WWGLACHVEVANYWRWLPLAVVLLNLTPPAPLINMLYLVVCSLLFRSWWVPGD 297
+W LA +A W VL NL ++ L + VC +LF SWW+ G+
Sbjct: 228 FWALAYSAILATALAWSLWLFVLKNLPASIASLSTLAVPVCGVLF-SWWLLGE 279
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,721,125
Number of Sequences: 1393205
Number of extensions: 9870615
Number of successful extensions: 22664
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 21953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22631
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
