Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003131A_C01 KMC003131A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A84674 60S ribosomal protein L10A [imported] - Arabidopsis ... 127 3e-41
ref|NP_565654.1| 60S ribosomal protein L10A; protein id: At2g275... 127 3e-41
ref|NP_197636.1| 60S ribosomal protein L10A; protein id: At5g224... 127 3e-41
sp|Q8VZB9|R10A_ARATH 60S ribosomal protein L10a-1 gi|17473553|gb... 127 3e-41
ref|NP_563813.1| 60S ribosomal protein L10A, putative; protein i... 127 3e-41
>pir||A84674 60S ribosomal protein L10A [imported] - Arabidopsis thaliana
Length = 222
Score = 127 bits (320), Expect(2) = 3e-41
Identities = 63/71 (88%), Positives = 66/71 (92%)
Frame = -2
Query: 532 QNPLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQN 353
Q LEAKVNETKA VKFQLKKVLCMGVAVGN+SMEEKQ+FQNVQ+SVNFLVSLLKKNWQN
Sbjct: 146 QESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQN 205
Query: 352 VRCLYLKSNHG 320
VRCLYLKS G
Sbjct: 206 VRCLYLKSTMG 216
Score = 63.2 bits (152), Expect(2) = 3e-41
Identities = 30/33 (90%), Positives = 32/33 (96%)
Frame = -1
Query: 623 LASEAVIKQIPRLLGPGLNKAGKFPTLVTHPES 525
LASE+VIKQIPRLLGPGLNKAGKFPTLV+H ES
Sbjct: 116 LASESVIKQIPRLLGPGLNKAGKFPTLVSHQES 148
>ref|NP_565654.1| 60S ribosomal protein L10A; protein id: At2g27530.1, supported by
cDNA: gi_13430467, supported by cDNA: gi_15810664,
supported by cDNA: gi_19698832 [Arabidopsis thaliana]
gi|27923989|sp|P59230|R10B_ARATH 60S ribosomal protein
L10a-2 gi|13430468|gb|AAK25856.1|AF360146_1 putative 60S
ribosomal protein L10A [Arabidopsis thaliana]
gi|15810665|gb|AAL07257.1| putative 60S ribosomal
protein L10A [Arabidopsis thaliana]
gi|19698833|gb|AAL91152.1| 60S ribosomal protein L10A
[Arabidopsis thaliana] gi|20197452|gb|AAC73045.2| 60S
ribosomal protein L10A [Arabidopsis thaliana]
gi|20197665|gb|AAM15190.1| 60S ribosomal protein L10A
[Arabidopsis thaliana]
Length = 216
Score = 127 bits (320), Expect(2) = 3e-41
Identities = 63/71 (88%), Positives = 66/71 (92%)
Frame = -2
Query: 532 QNPLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQN 353
Q LEAKVNETKA VKFQLKKVLCMGVAVGN+SMEEKQ+FQNVQ+SVNFLVSLLKKNWQN
Sbjct: 140 QESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQN 199
Query: 352 VRCLYLKSNHG 320
VRCLYLKS G
Sbjct: 200 VRCLYLKSTMG 210
Score = 63.2 bits (152), Expect(2) = 3e-41
Identities = 30/33 (90%), Positives = 32/33 (96%)
Frame = -1
Query: 623 LASEAVIKQIPRLLGPGLNKAGKFPTLVTHPES 525
LASE+VIKQIPRLLGPGLNKAGKFPTLV+H ES
Sbjct: 110 LASESVIKQIPRLLGPGLNKAGKFPTLVSHQES 142
>ref|NP_197636.1| 60S ribosomal protein L10A; protein id: At5g22440.1, supported by
cDNA: gi_14335147, supported by cDNA: gi_18655358
[Arabidopsis thaliana] gi|27923990|sp|P59231|R10C_ARATH
60S ribosomal protein L10a-3 gi|9757825|dbj|BAB08343.1|
60S ribosomal protein L10A [Arabidopsis thaliana]
gi|14335148|gb|AAK59854.1| AT5g22440/MWD9_24
[Arabidopsis thaliana] gi|18655359|gb|AAL76135.1|
AT5g22440/MWD9_24 [Arabidopsis thaliana]
Length = 217
Score = 127 bits (319), Expect(2) = 3e-41
Identities = 63/71 (88%), Positives = 66/71 (92%)
Frame = -2
Query: 532 QNPLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQN 353
Q LE+KVNETKA VKFQLKKVLCMGVAVGN+SMEEKQIFQNVQ+SVNFLVSLLKKNWQN
Sbjct: 141 QESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQN 200
Query: 352 VRCLYLKSNHG 320
VRCLYLKS G
Sbjct: 201 VRCLYLKSTMG 211
Score = 63.2 bits (152), Expect(2) = 3e-41
Identities = 30/33 (90%), Positives = 32/33 (96%)
Frame = -1
Query: 623 LASEAVIKQIPRLLGPGLNKAGKFPTLVTHPES 525
LASE+VIKQIPRLLGPGLNKAGKFPTLV+H ES
Sbjct: 111 LASESVIKQIPRLLGPGLNKAGKFPTLVSHQES 143
>sp|Q8VZB9|R10A_ARATH 60S ribosomal protein L10a-1 gi|17473553|gb|AAL38253.1| putative
ribosomal protein L10 [Arabidopsis thaliana]
gi|21386915|gb|AAM47861.1| putative ribosomal protein
L10 [Arabidopsis thaliana]
Length = 216
Score = 127 bits (319), Expect(2) = 3e-41
Identities = 63/71 (88%), Positives = 66/71 (92%)
Frame = -2
Query: 532 QNPLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQN 353
Q LE+KVNETKA VKFQLKKVLCMGVAVGN+SMEEKQIFQNVQ+SVNFLVSLLKKNWQN
Sbjct: 140 QESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQN 199
Query: 352 VRCLYLKSNHG 320
VRCLYLKS G
Sbjct: 200 VRCLYLKSTMG 210
Score = 63.2 bits (152), Expect(2) = 3e-41
Identities = 30/33 (90%), Positives = 32/33 (96%)
Frame = -1
Query: 623 LASEAVIKQIPRLLGPGLNKAGKFPTLVTHPES 525
LASE+VIKQIPRLLGPGLNKAGKFPTLV+H ES
Sbjct: 110 LASESVIKQIPRLLGPGLNKAGKFPTLVSHQES 142
>ref|NP_563813.1| 60S ribosomal protein L10A, putative; protein id: At1g08360.1
[Arabidopsis thaliana]
Length = 155
Score = 127 bits (319), Expect(2) = 3e-41
Identities = 63/71 (88%), Positives = 66/71 (92%)
Frame = -2
Query: 532 QNPLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQN 353
Q LE+KVNETKA VKFQLKKVLCMGVAVGN+SMEEKQIFQNVQ+SVNFLVSLLKKNWQN
Sbjct: 79 QESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQN 138
Query: 352 VRCLYLKSNHG 320
VRCLYLKS G
Sbjct: 139 VRCLYLKSTMG 149
Score = 63.2 bits (152), Expect(2) = 3e-41
Identities = 30/33 (90%), Positives = 32/33 (96%)
Frame = -1
Query: 623 LASEAVIKQIPRLLGPGLNKAGKFPTLVTHPES 525
LASE+VIKQIPRLLGPGLNKAGKFPTLV+H ES
Sbjct: 49 LASESVIKQIPRLLGPGLNKAGKFPTLVSHQES 81
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,887,645
Number of Sequences: 1393205
Number of extensions: 10180455
Number of successful extensions: 22152
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 21567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22142
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
