Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003124A_C01 KMC003124A_c01
(410 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_473218.1| hypothetical protein [Plasmodium falciparum 3D7... 34 0.38
gb|EAA24192.1| Polysaccharide deacetylase [Fusobacterium nucleat... 33 1.1
ref|XP_229580.1| similar to DKFZP566O1646 protein [Homo sapiens]... 32 1.4
gb|EAA17272.1| cysteine repeat modular protein 2 PbCRM2-related ... 31 4.2
ref|NP_593846.1| hypothetical protein; contains 9 predicted tran... 30 5.4
>ref|NP_473218.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|7494210|pir||T18440 hypothetical protein C0425w -
malaria parasite (Plasmodium falciparum)
gi|3649772|emb|CAB11121.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 4550
Score = 34.3 bits (77), Expect = 0.38
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 143 NFKQSIFFSNLIMKNCSNTTFQEFI*KNGDFYQNKSSLSYPQM 271
NF + ++ NL K N F FI N Y N SLSY +
Sbjct: 696 NFLMNPYYYNLTFKQIKNLIFSNFILNNNTLYSNYQSLSYQSL 738
>gb|EAA24192.1| Polysaccharide deacetylase [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 363
Score = 32.7 bits (73), Expect = 1.1
Identities = 18/61 (29%), Positives = 32/61 (51%)
Frame = +2
Query: 80 SRAIQCLQKKFRIWWSF*AKENFKQSIFFSNLIMKNCSNTTFQEFI*KNGDFYQNKSSLS 259
SR + ++K+F + KEN + + N I+K C QEFI KN +++ +++
Sbjct: 209 SRKAKIIKKEFFNIFKNFYKENIENKVIDKNEILKKC-----QEFINKNSEYFSDENEAE 263
Query: 260 Y 262
Y
Sbjct: 264 Y 264
>ref|XP_229580.1| similar to DKFZP566O1646 protein [Homo sapiens] [Rattus norvegicus]
Length = 380
Score = 32.3 bits (72), Expect = 1.4
Identities = 17/55 (30%), Positives = 26/55 (46%)
Frame = +3
Query: 240 KISPHCHIPKCQHI*RKSVGSCDVCGN*AQSLKNIKAPINQ*SNQDQWYTVYTVT 404
K +P C KC + K + C++C L +K + S D W T++TVT
Sbjct: 309 KKTPDCAQRKCYQLRLKRISICELC-----LLGELKVNVVNGSQADTWVTLFTVT 358
>gb|EAA17272.1| cysteine repeat modular protein 2 PbCRM2-related [Plasmodium yoelii
yoelii]
Length = 1715
Score = 30.8 bits (68), Expect = 4.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 205 KSCIRTILHDQIGKENGLLKIFFCLKAPPYSKFLLQTL 92
++C I+ I EN LLK F L + PY KFL+ L
Sbjct: 672 ENCSNPIMMKPIYDENKLLKNIFLLTSHPYDKFLIINL 709
>ref|NP_593846.1| hypothetical protein; contains 9 predicted transmembrane helices;
similar to S. cerevisiae YJL108C-Protein of unknown
function regulated by pheromone; similar to S. pombe
SPAC7D4.12c [Schizosaccharomyces pombe]
gi|7492674|pir||T39090 probable integral membrane
protein - fission yeast (Schizosaccharomyces pombe)
gi|2440206|emb|CAB16729.1| hypothetical protein;
contains 9 predicted transmembrane helices; similar to
S. cerevisiae YJL108C-Protein of unknown function
regulated by pheromone; similar to S. pombe SPAC7D4.12c
[Schizosaccharomyces pombe]
Length = 759
Score = 30.4 bits (67), Expect = 5.4
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 214 KLLKSCIRTILHDQIGKENGLLKIFFCLKAPPYSK-FLLQTLYG 86
KL+ + +LHD++G E + + K+PPY + ++L YG
Sbjct: 402 KLVHDIYKAVLHDRMGVEEAIRGLDEIFKSPPYFRTWILVVFYG 445
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 327,274,246
Number of Sequences: 1393205
Number of extensions: 6345065
Number of successful extensions: 11068
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11066
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 7023606888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
