Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003123A_C02 KMC003123A_c02
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA81870.1| ESTD24835(R2634) corresponds to a region of the ... 99 5e-20
dbj|BAB78681.1| P0452F10.18 [Oryza sativa (japonica cultivar-gro... 91 8e-18
dbj|BAB02012.1| gene_id:MOB24.18~unknown protein [Arabidopsis th... 81 9e-15
ref|NP_189103.1| hypothetical protein; protein id: At3g24600.1 [... 81 9e-15
dbj|BAB02013.1| emb|CAB53482.1~gene_id:MOB24.19~similar to unkno... 77 2e-13
>dbj|BAA81870.1| ESTD24835(R2634) corresponds to a region of the predicted
gene.~Similar to Arabidopsis thaliana chromosome II BAC
T06D20 genomic sequence, complete sequence.(U90439)
[Oryza sativa (japonica cultivar-group)]
Length = 331
Score = 98.6 bits (244), Expect = 5e-20
Identities = 47/87 (54%), Positives = 61/87 (70%)
Frame = -3
Query: 586 YYQPRKSHRMVSVNLVGKKVPLYGAGSTITESQTGVVVVSLKLKFEIVSRGNVVGKLVRT 407
YYQPRKSHR+V+ + G KVPLYGAG + S +G V L L F++ SRG V+GKLVR
Sbjct: 241 YYQPRKSHRLVTAVVHGNKVPLYGAGGGLMLSSSGGAV-PLTLDFDLTSRGYVIGKLVRV 299
Query: 406 KHHKEITCPLVIDSSGSKPIKFKKNSC 326
H +TCP+V+D+ +KPIKF K +C
Sbjct: 300 THKVHVTCPIVVDAKKTKPIKFSKKAC 326
>dbj|BAB78681.1| P0452F10.18 [Oryza sativa (japonica cultivar-group)]
Length = 321
Score = 91.3 bits (225), Expect = 8e-18
Identities = 44/89 (49%), Positives = 59/89 (65%)
Frame = -3
Query: 586 YYQPRKSHRMVSVNLVGKKVPLYGAGSTITESQTGVVVVSLKLKFEIVSRGNVVGKLVRT 407
+YQPR SH + S + G+K+PLYGAG T S G V L L + +RG V+GKLVR
Sbjct: 233 FYQPRSSHHVASAIVHGEKIPLYGAGETFALSNAGGAV-PLTLDLVVRARGYVIGKLVRV 291
Query: 406 KHHKEITCPLVIDSSGSKPIKFKKNSCTY 320
H K + CP+VIDS SKPI+F +++C+Y
Sbjct: 292 THTKRVKCPVVIDSGSSKPIRFIQSACSY 320
>dbj|BAB02012.1| gene_id:MOB24.18~unknown protein [Arabidopsis thaliana]
Length = 306
Score = 81.3 bits (199), Expect = 9e-15
Identities = 46/89 (51%), Positives = 59/89 (65%), Gaps = 2/89 (2%)
Frame = -3
Query: 586 YYQPRKSHRMVSVNLVGKKVPLYGAGSTITES-QTGVVVVSLKLKFEIVSRGNVVGKLVR 410
YYQPRKS + V L G +VPLYGAG + S + G V V KL+FEI SRGN++GKLV+
Sbjct: 215 YYQPRKSKHISIVKLTGAEVPLYGAGPHLAASDKKGKVPV--KLEFEIRSRGNLLGKLVK 272
Query: 409 TKHHKEITCPLVIDSS-GSKPIKFKKNSC 326
+KH ++C I SS SKPI+F +C
Sbjct: 273 SKHENHVSCSFFISSSKTSKPIEFTHKTC 301
>ref|NP_189103.1| hypothetical protein; protein id: At3g24600.1 [Arabidopsis
thaliana]
Length = 506
Score = 81.3 bits (199), Expect = 9e-15
Identities = 46/89 (51%), Positives = 59/89 (65%), Gaps = 2/89 (2%)
Frame = -3
Query: 586 YYQPRKSHRMVSVNLVGKKVPLYGAGSTITES-QTGVVVVSLKLKFEIVSRGNVVGKLVR 410
YYQPRKS + V L G +VPLYGAG + S + G V V KL+FEI SRGN++GKLV+
Sbjct: 415 YYQPRKSKHISIVKLTGAEVPLYGAGPHLAASDKKGKVPV--KLEFEIRSRGNLLGKLVK 472
Query: 409 TKHHKEITCPLVIDSS-GSKPIKFKKNSC 326
+KH ++C I SS SKPI+F +C
Sbjct: 473 SKHENHVSCSFFISSSKTSKPIEFTHKTC 501
Score = 41.2 bits (95), Expect = 0.010
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = -3
Query: 586 YYQPRKSHRMVSVNLVGKKVPLYGAGSTITES 491
Y+QP++S+ +NL+G KVPLYGAG+ + S
Sbjct: 211 YHQPKQSNHTSRINLIGSKVPLYGAGAELVAS 242
>dbj|BAB02013.1| emb|CAB53482.1~gene_id:MOB24.19~similar to unknown protein
[Arabidopsis thaliana]
Length = 298
Score = 77.0 bits (188), Expect = 2e-13
Identities = 37/87 (42%), Positives = 56/87 (63%)
Frame = -3
Query: 586 YYQPRKSHRMVSVNLVGKKVPLYGAGSTITESQTGVVVVSLKLKFEIVSRGNVVGKLVRT 407
Y+QP++S+ +NL+G KVPLYGAG+ + S V +KL+FEI SR N+VG LV++
Sbjct: 211 YHQPKQSNHTSRINLIGSKVPLYGAGAELVASDNSGGV-PVKLEFEIRSRANIVGNLVKS 269
Query: 406 KHHKEITCPLVIDSSGSKPIKFKKNSC 326
+H K ++C I S + +KF +C
Sbjct: 270 RHRKHLSCFFFISSYNTTFVKFTHKTC 296
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,826,380
Number of Sequences: 1393205
Number of extensions: 10059798
Number of successful extensions: 25599
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25579
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
