Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003110A_C01 KMC003110A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF86340.1|AF277455_1 UMP synthase [Nicotiana plumbaginifolia] 162 2e-39
sp|Q42942|PYR5_TOBAC Uridine 5'-monophosphate synthase (UMP synt... 161 5e-39
gb|AAF61489.1|AF210322_1 UMP synthase [Oryza sativa] 156 1e-37
dbj|BAA92171.1| UMP synthase 1 [Oryza sativa (japonica cultivar-... 156 1e-37
ref|NP_680130.1| similar to UMP synthase {Arabidopsis thaliana};... 155 3e-37
>gb|AAF86340.1|AF277455_1 UMP synthase [Nicotiana plumbaginifolia]
Length = 477
Score = 162 bits (411), Expect = 2e-39
Identities = 77/93 (82%), Positives = 81/93 (86%)
Frame = -2
Query: 565 EDHSDFVIGFISVNPASWPGAPINPSFIQATPGVQMVTGGDALGQQYNTPYSVVHDRGSD 386
EDHSDFVIGFISVNPASWP P NPS I ATPGVQ+V GGDALGQQYNTP +V+ DRGSD
Sbjct: 384 EDHSDFVIGFISVNPASWPNGPGNPSLIHATPGVQLVKGGDALGQQYNTPSAVIADRGSD 443
Query: 385 IIIVGRGIIKAANPAEAAHEYRLQGWNAYLAKC 287
IIIVGRGIIKAANP EAA EYRLQGW+AYL C
Sbjct: 444 IIIVGRGIIKAANPIEAAREYRLQGWDAYLVNC 476
>sp|Q42942|PYR5_TOBAC Uridine 5'-monophosphate synthase (UMP synthase) [Includes: Orotate
phosphoribosyltransferase (OPRtase); Orotidine
5'-phosphate decarboxylase (OMPdecase)]
gi|7433947|pir||T02058 UMP synthase - common tobacco
(fragment) gi|747980|gb|AAC49115.1| UMP synthase
Length = 461
Score = 161 bits (408), Expect = 5e-39
Identities = 77/93 (82%), Positives = 81/93 (86%)
Frame = -2
Query: 565 EDHSDFVIGFISVNPASWPGAPINPSFIQATPGVQMVTGGDALGQQYNTPYSVVHDRGSD 386
EDHSDFVIGFISVNPASWP AP NPS I ATPGVQ+V GGDALGQ YNTP +V+ DRGSD
Sbjct: 368 EDHSDFVIGFISVNPASWPNAPGNPSLIHATPGVQLVKGGDALGQLYNTPSAVIADRGSD 427
Query: 385 IIIVGRGIIKAANPAEAAHEYRLQGWNAYLAKC 287
IIIVGRGIIKAANP EAA EYRLQGW+AYL C
Sbjct: 428 IIIVGRGIIKAANPIEAAREYRLQGWDAYLVNC 460
>gb|AAF61489.1|AF210322_1 UMP synthase [Oryza sativa]
Length = 316
Score = 156 bits (395), Expect = 1e-37
Identities = 73/89 (82%), Positives = 81/89 (90%)
Frame = -2
Query: 565 EDHSDFVIGFISVNPASWPGAPINPSFIQATPGVQMVTGGDALGQQYNTPYSVVHDRGSD 386
E HSDFVIGFISVNPASW AP +P+FI ATPGVQMV+GGDALGQQYNTP+SV++DRGSD
Sbjct: 223 EQHSDFVIGFISVNPASWSVAPSSPAFIHATPGVQMVSGGDALGQQYNTPHSVINDRGSD 282
Query: 385 IIIVGRGIIKAANPAEAAHEYRLQGWNAY 299
IIIVGRGIIKA+NPAE A EYR+QGW AY
Sbjct: 283 IIIVGRGIIKASNPAETAREYRIQGWGAY 311
>dbj|BAA92171.1| UMP synthase 1 [Oryza sativa (japonica cultivar-group)]
gi|7381460|gb|AAF61490.1|AF210323_1 UMP synthase [Oryza
sativa] gi|7381462|gb|AAF61491.1|AF210324_1 UMP synthase
[Oryza sativa] gi|19386829|dbj|BAB86207.1| UMP synthase
1 [Oryza sativa (japonica cultivar-group)]
Length = 477
Score = 156 bits (395), Expect = 1e-37
Identities = 73/89 (82%), Positives = 81/89 (90%)
Frame = -2
Query: 565 EDHSDFVIGFISVNPASWPGAPINPSFIQATPGVQMVTGGDALGQQYNTPYSVVHDRGSD 386
E HSDFVIGFISVNPASW AP +P+FI ATPGVQMV+GGDALGQQYNTP+SV++DRGSD
Sbjct: 384 EQHSDFVIGFISVNPASWSVAPSSPAFIHATPGVQMVSGGDALGQQYNTPHSVINDRGSD 443
Query: 385 IIIVGRGIIKAANPAEAAHEYRLQGWNAY 299
IIIVGRGIIKA+NPAE A EYR+QGW AY
Sbjct: 444 IIIVGRGIIKASNPAETAREYRIQGWGAY 472
>ref|NP_680130.1| similar to UMP synthase {Arabidopsis thaliana}; protein id:
At3g54470.1 gi|21431826|sp|Q42586|PYR5_ARATH Uridine
5'-monophosphate synthase (UMP synthase) [Includes:
Orotate phosphoribosyltransferase (OPRtase); Orotidine
5'-phosphate decarboxylase (OMPdecase)]
gi|11258341|pir||T47606 UMP synthase - Arabidopsis
thaliana gi|7258350|emb|CAB77567.1| UMP synthase
[Arabidopsis thaliana] gi|22655298|gb|AAM98239.1|
unknown protein [Arabidopsis thaliana]
Length = 476
Score = 155 bits (392), Expect = 3e-37
Identities = 73/92 (79%), Positives = 80/92 (86%)
Frame = -2
Query: 559 HSDFVIGFISVNPASWPGAPINPSFIQATPGVQMVTGGDALGQQYNTPYSVVHDRGSDII 380
HSDFV+GFISVNPASW + PS I ATPGVQMV GGDALGQQYNTP+SV+ +RGSDII
Sbjct: 384 HSDFVMGFISVNPASWKCGYVYPSMIHATPGVQMVKGGDALGQQYNTPHSVITERGSDII 443
Query: 379 IVGRGIIKAANPAEAAHEYRLQGWNAYLAKCA 284
IVGRGIIKA NPAE AHEYR+QGWNAYL KC+
Sbjct: 444 IVGRGIIKAENPAETAHEYRVQGWNAYLEKCS 475
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,909,767
Number of Sequences: 1393205
Number of extensions: 10670806
Number of successful extensions: 23651
Number of sequences better than 10.0: 141
Number of HSP's better than 10.0 without gapping: 22869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23551
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
