Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003108A_C01 KMC003108A_c01
(443 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566725.2| expressed protein; protein id: At3g23300.1 [Ara... 51 3e-08
gb|AAN41290.1| unknown protein [Arabidopsis thaliana] 51 3e-08
gb|AAK59642.2| unknown protein [Arabidopsis thaliana] 51 3e-08
pir||D86176 hypothetical protein [imported] - Arabidopsis thalia... 49 6e-08
ref|NP_563706.1| ankyrin-like protein; protein id: At1g04430.1, ... 49 6e-08
>ref|NP_566725.2| expressed protein; protein id: At3g23300.1 [Arabidopsis thaliana]
gi|11994314|dbj|BAB02273.1| ankyrin-like protein
[Arabidopsis thaliana]
Length = 611
Score = 50.8 bits (120), Expect(2) = 3e-08
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = -2
Query: 442 EMDRILRPNAFILVHDKKSVVELIKKYLPAL 350
EMDRILRP+ FIL+ DK+SVV+L+KKYL AL
Sbjct: 542 EMDRILRPSGFILIRDKQSVVDLVKKYLKAL 572
Score = 26.9 bits (58), Expect(2) = 3e-08
Identities = 9/16 (56%), Positives = 15/16 (93%)
Frame = -3
Query: 291 VLIIQKKMWLISDSIQ 244
+LI+QKK+WL S+S++
Sbjct: 593 ILIVQKKLWLTSESLR 608
>gb|AAN41290.1| unknown protein [Arabidopsis thaliana]
Length = 376
Score = 50.8 bits (120), Expect(2) = 3e-08
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = -2
Query: 442 EMDRILRPNAFILVHDKKSVVELIKKYLPAL 350
EMDRILRP+ FIL+ DK+SVV+L+KKYL AL
Sbjct: 307 EMDRILRPSGFILIRDKQSVVDLVKKYLKAL 337
Score = 26.9 bits (58), Expect(2) = 3e-08
Identities = 9/16 (56%), Positives = 15/16 (93%)
Frame = -3
Query: 291 VLIIQKKMWLISDSIQ 244
+LI+QKK+WL S+S++
Sbjct: 358 ILIVQKKLWLTSESLR 373
>gb|AAK59642.2| unknown protein [Arabidopsis thaliana]
Length = 314
Score = 50.8 bits (120), Expect(2) = 3e-08
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = -2
Query: 442 EMDRILRPNAFILVHDKKSVVELIKKYLPAL 350
EMDRILRP+ FIL+ DK+SVV+L+KKYL AL
Sbjct: 245 EMDRILRPSGFILIRDKQSVVDLVKKYLKAL 275
Score = 26.9 bits (58), Expect(2) = 3e-08
Identities = 9/16 (56%), Positives = 15/16 (93%)
Frame = -3
Query: 291 VLIIQKKMWLISDSIQ 244
+LI+QKK+WL S+S++
Sbjct: 296 ILIVQKKLWLTSESLR 311
>pir||D86176 hypothetical protein [imported] - Arabidopsis thaliana
gi|2341032|gb|AAB70432.1| EST gb|ATTS0956 comes from
this gene. [Arabidopsis thaliana]
Length = 670
Score = 48.5 bits (114), Expect(2) = 6e-08
Identities = 22/31 (70%), Positives = 26/31 (82%)
Frame = -2
Query: 442 EMDRILRPNAFILVHDKKSVVELIKKYLPAL 350
EMDRILRP F+++ DK+SVVE IKKYL AL
Sbjct: 594 EMDRILRPTGFVIIRDKQSVVESIKKYLQAL 624
Score = 28.1 bits (61), Expect(2) = 6e-08
Identities = 11/19 (57%), Positives = 16/19 (83%)
Frame = -3
Query: 291 VLIIQKKMWLISDSIQVSE 235
V I+QKK+WL S+S++ SE
Sbjct: 652 VFIVQKKLWLTSESLRDSE 670
>ref|NP_563706.1| ankyrin-like protein; protein id: At1g04430.1, supported by cDNA:
108617., supported by cDNA: gi_14423547, supported by
cDNA: gi_15450899, supported by cDNA: gi_17978686,
supported by cDNA: gi_20148262 [Arabidopsis thaliana]
gi|15450900|gb|AAK96721.1| Unknown protein [Arabidopsis
thaliana] gi|17978687|gb|AAL47337.1| unknown protein
[Arabidopsis thaliana]
Length = 623
Score = 48.5 bits (114), Expect(2) = 6e-08
Identities = 22/31 (70%), Positives = 26/31 (82%)
Frame = -2
Query: 442 EMDRILRPNAFILVHDKKSVVELIKKYLPAL 350
EMDRILRP F+++ DK+SVVE IKKYL AL
Sbjct: 547 EMDRILRPTGFVIIRDKQSVVESIKKYLQAL 577
Score = 28.1 bits (61), Expect(2) = 6e-08
Identities = 11/19 (57%), Positives = 16/19 (83%)
Frame = -3
Query: 291 VLIIQKKMWLISDSIQVSE 235
V I+QKK+WL S+S++ SE
Sbjct: 605 VFIVQKKLWLTSESLRDSE 623
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 375,212,588
Number of Sequences: 1393205
Number of extensions: 7567958
Number of successful extensions: 14757
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 14511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14754
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
