Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003105A_C01 KMC003105A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567546.1| putative protein; protein id: At4g17950.1, supp... 44 0.001
pir||T52291 probable DNA-binding protein AT-hook 2 [imported] - ... 43 0.002
ref|NP_199476.1| putative protein; protein id: At5g46640.1 [Arab... 40 0.015
ref|NP_109556.1| unknown protein [Mesorhizobium loti] gi|1402830... 37 0.17
gb|AAK52720.1|AF334671_1 Wilms' tumor suppressor 1b [Oncorhynchu... 35 0.65
>ref|NP_567546.1| putative protein; protein id: At4g17950.1, supported by cDNA:
gi_15451059, supported by cDNA: gi_20148332 [Arabidopsis
thaliana] gi|15451060|gb|AAK96801.1| putative protein
[Arabidopsis thaliana] gi|20148333|gb|AAM10057.1|
putative protein [Arabidopsis thaliana]
Length = 439
Score = 44.3 bits (103), Expect = 0.001
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 13/83 (15%)
Frame = -3
Query: 564 PSSAPTSQMLAFGAPVTPTSPPTS-QGPSTESSEDNDQSS---------FNRGPGLYNNA 415
P+SAP + ML+FG P SP + Q S+ESSE+N+ +S + G++ N+
Sbjct: 358 PASAPAN-MLSFGGVGGPGSPRSQGQQHSSESSEENESNSPLHRRSNNNNSNNHGIFGNS 416
Query: 414 T-QPVHS--MQMYHHPLWAGQTP 355
T QP+H MQMY + LW G +P
Sbjct: 417 TPQPLHQIPMQMYQN-LWPGNSP 438
>pir||T52291 probable DNA-binding protein AT-hook 2 [imported] - Arabidopsis
thaliana gi|2916772|emb|CAA11837.1| AT-hook protein 2
[Arabidopsis thaliana]
Length = 439
Score = 43.1 bits (100), Expect = 0.002
Identities = 33/83 (39%), Positives = 47/83 (55%), Gaps = 13/83 (15%)
Frame = -3
Query: 564 PSSAPTSQMLAFGAPVTPTSPPTS-QGPSTESSEDNDQSS---------FNRGPGLYNNA 415
P+SAP + ML+FG P SP + Q S+ESSE+N+ +S + G++ N
Sbjct: 358 PASAPAN-MLSFGGVGGPGSPRSQGQQHSSESSEENESNSPLHRRSNNNNSNNHGIFGNF 416
Query: 414 T-QPVHS--MQMYHHPLWAGQTP 355
T QP+H MQMY + LW G +P
Sbjct: 417 TPQPLHQIPMQMYQN-LWPGNSP 438
>ref|NP_199476.1| putative protein; protein id: At5g46640.1 [Arabidopsis thaliana]
gi|9758500|dbj|BAB08908.1| contains similarity to
AT-hook DNA-binding protein~gene_id:MZA15.3 [Arabidopsis
thaliana]
Length = 386
Score = 40.4 bits (93), Expect = 0.015
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Frame = -3
Query: 564 PSSAPTSQMLAFGAPVTPTSPPTSQGPSTESSEDNDQSS----FNRGPGLY----NNATQ 409
P+SAP + ML FG+ SQGPS+ESSE+N+ S + G+Y Q
Sbjct: 317 PASAPAN-MLNFGS--------VSQGPSSESSEENESGSPAMHRDNNNGIYGAQQQQQQQ 367
Query: 408 PV--HSMQMYHHPLWA 367
P+ H MQMY H LW+
Sbjct: 368 PLHPHQMQMYQH-LWS 382
>ref|NP_109556.1| unknown protein [Mesorhizobium loti] gi|14028303|dbj|BAB54895.1|
unknown protein [Mesorhizobium loti]
Length = 427
Score = 37.0 bits (84), Expect = 0.17
Identities = 22/67 (32%), Positives = 33/67 (48%)
Frame = -3
Query: 561 SSAPTSQMLAFGAPVTPTSPPTSQGPSTESSEDNDQSSFNRGPGLYNNATQPVHSMQMYH 382
+S+P S +A GAP TP++P TS PS ++ ++ N A P H++Q
Sbjct: 257 TSSPPSTTVALGAPTTPSAPSTSSAPSAPFGDNPSDGRYHH----INGADLP-HAVQSAD 311
Query: 381 HPLWAGQ 361
H A Q
Sbjct: 312 HVANASQ 318
>gb|AAK52720.1|AF334671_1 Wilms' tumor suppressor 1b [Oncorhynchus mykiss]
Length = 388
Score = 35.0 bits (79), Expect = 0.65
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Frame = -3
Query: 534 AFGAPVTPTSPPTSQ------GPSTESSEDNDQSSFNRGPGLYNNATQ----PVHSMQMY 385
AFGAP P+ PP SQ P + D SS N+G ++ AT P H Q
Sbjct: 96 AFGAPPPPSQPPPSQPRMFSNAPYLTNCMDTQPSSRNQGYSAFDGATNYGHTPTHHSQFL 155
Query: 384 HH 379
H
Sbjct: 156 SH 157
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,268,271
Number of Sequences: 1393205
Number of extensions: 9590397
Number of successful extensions: 26888
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 24907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26761
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
