Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003101A_C01 KMC003101A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM20595.1| integral membrane protein, putative [Arabidopsis ... 154 5e-37
ref|NP_188806.1| integral membrane protein, putative; protein id... 154 5e-37
ref|NP_564787.1| expressed protein; protein id: At1g61890.1, sup... 147 1e-34
gb|AAK82541.1| At1g61890/F8K4_9 [Arabidopsis thaliana] 146 1e-34
ref|NP_172632.1| unknown protein; protein id: At1g11670.1 [Arabi... 146 2e-34
>gb|AAM20595.1| integral membrane protein, putative [Arabidopsis thaliana]
Length = 506
Score = 154 bits (390), Expect = 5e-37
Identities = 69/91 (75%), Positives = 75/91 (81%)
Frame = -2
Query: 549 QPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPFGAVLGFYFKFGAMGIWLGMLAGTVLQTI 370
QPVLSGVAVGCGWQTFVA VNVGCYY IGIP GA+ GFYF FGA GIW GM+ GTV+QT
Sbjct: 412 QPVLSGVAVGCGWQTFVAKVNVGCYYIIGIPLGALFGFYFNFGAKGIWTGMIGGTVIQTF 471
Query: 369 ILVWVTFRTDWNKEIEEATKRLNKWEESTTE 277
IL WVTFRTDW KE+EEA+KRL+KW E
Sbjct: 472 ILAWVTFRTDWTKEVEEASKRLDKWSNKKQE 502
>ref|NP_188806.1| integral membrane protein, putative; protein id: At3g21690.1,
supported by cDNA: gi_20466555 [Arabidopsis thaliana]
gi|11994404|dbj|BAB02363.1|
gb|AAC28507.1~gene_id:MIL23.25~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 506
Score = 154 bits (390), Expect = 5e-37
Identities = 69/91 (75%), Positives = 75/91 (81%)
Frame = -2
Query: 549 QPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPFGAVLGFYFKFGAMGIWLGMLAGTVLQTI 370
QPVLSGVAVGCGWQTFVA VNVGCYY IGIP GA+ GFYF FGA GIW GM+ GTV+QT
Sbjct: 412 QPVLSGVAVGCGWQTFVAKVNVGCYYIIGIPLGALFGFYFNFGAKGIWTGMIGGTVIQTF 471
Query: 369 ILVWVTFRTDWNKEIEEATKRLNKWEESTTE 277
IL WVTFRTDW KE+EEA+KRL+KW E
Sbjct: 472 ILAWVTFRTDWTKEVEEASKRLDKWSNKKQE 502
>ref|NP_564787.1| expressed protein; protein id: At1g61890.1, supported by cDNA:
gi_13272458, supported by cDNA: gi_15028186, supported
by cDNA: gi_15081772, supported by cDNA: gi_16209723
[Arabidopsis thaliana] gi|7486693|pir||T02134
hypothetical protein F8K4.9 - Arabidopsis thaliana
gi|3367522|gb|AAC28507.1| EST gb|T04691 comes from this
gene. [Arabidopsis thaliana]
gi|13272459|gb|AAK17168.1|AF325100_1 unknown protein
[Arabidopsis thaliana] gi|16209724|gb|AAL14417.1|
At1g61890/F8K4_9 [Arabidopsis thaliana]
Length = 501
Score = 147 bits (370), Expect = 1e-34
Identities = 68/95 (71%), Positives = 80/95 (83%)
Frame = -2
Query: 549 QPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPFGAVLGFYFKFGAMGIWLGMLAGTVLQTI 370
QPVLSGVAVGCGWQ FVAYVN+GCYY +GIP G VLGF + GA GIW GM+ GT++QTI
Sbjct: 407 QPVLSGVAVGCGWQAFVAYVNIGCYYVVGIPVGFVLGFTYDMGAKGIWTGMIGGTLMQTI 466
Query: 369 ILVWVTFRTDWNKEIEEATKRLNKWEESTTEPLLK 265
ILV VT RTDW+KE+E+A+ RL++WEES EPLLK
Sbjct: 467 ILVIVTLRTDWDKEVEKASSRLDQWEES-REPLLK 500
>gb|AAK82541.1| At1g61890/F8K4_9 [Arabidopsis thaliana]
Length = 501
Score = 146 bits (369), Expect = 1e-34
Identities = 67/95 (70%), Positives = 80/95 (83%)
Frame = -2
Query: 549 QPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPFGAVLGFYFKFGAMGIWLGMLAGTVLQTI 370
QPVLSGVAVGCGWQ FVAYVN+GCYY +GIP G VLGF + GA GIW GM+ GT++QTI
Sbjct: 407 QPVLSGVAVGCGWQAFVAYVNIGCYYVVGIPVGFVLGFTYDMGAKGIWTGMIGGTLMQTI 466
Query: 369 ILVWVTFRTDWNKEIEEATKRLNKWEESTTEPLLK 265
+LV VT RTDW+KE+E+A+ RL++WEES EPLLK
Sbjct: 467 VLVIVTLRTDWDKEVEKASSRLDQWEES-REPLLK 500
>ref|NP_172632.1| unknown protein; protein id: At1g11670.1 [Arabidopsis thaliana]
gi|25402678|pir||C86250 hypothetical protein [imported]
- Arabidopsis thaliana
gi|4835789|gb|AAD30255.1|AC007296_16 Strong similarity
to gi|3367522 F8K4.9 from Arabidopsis thaliana BAC
gb|AC004392. EST gb|W43487 comes from this gene
Length = 503
Score = 146 bits (368), Expect = 2e-34
Identities = 66/95 (69%), Positives = 81/95 (84%)
Frame = -2
Query: 549 QPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPFGAVLGFYFKFGAMGIWLGMLAGTVLQTI 370
QPVLSGVAVGCGWQ +VAYVN+GCYY +GIP G VLGF + GA GIW GM+ GT++QTI
Sbjct: 410 QPVLSGVAVGCGWQAYVAYVNIGCYYIVGIPIGYVLGFTYDMGARGIWTGMIGGTLMQTI 469
Query: 369 ILVWVTFRTDWNKEIEEATKRLNKWEESTTEPLLK 265
ILV VTFRTDW+KE+E+A++RL++WE+ T PLLK
Sbjct: 470 ILVIVTFRTDWDKEVEKASRRLDQWED--TSPLLK 502
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,731,762
Number of Sequences: 1393205
Number of extensions: 11341508
Number of successful extensions: 34798
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 33277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34741
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
