Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003099A_C01 KMC003099A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB88944.1| protein phosphatase 2C [Mesembryanthemum crystal... 69 4e-11
ref|NP_194903.1| protein phosphatase 2C (PP2C), putative; protei... 68 7e-11
gb|AAL86334.1| unknown protein [Arabidopsis thaliana] gi|2213675... 68 7e-11
gb|AAL87187.1|AF480497_15 putative protein phosphatase 2C [Oryza... 60 1e-08
pir||T50783 protein phosphatase 2C-like protein - Arabidopsis th... 59 3e-08
>dbj|BAB88944.1| protein phosphatase 2C [Mesembryanthemum crystallinum]
Length = 319
Score = 68.9 bits (167), Expect = 4e-11
Identities = 34/48 (70%), Positives = 40/48 (82%)
Frame = -3
Query: 567 MIKPIEDAEEAAKRLMQEAYQRGSSDNITCVVVRFVVNQGASSRSTSS 424
M+KPI+D EEAAK+LMQEAYQRGS+DNITCVVVRF+ N SS + S
Sbjct: 245 MVKPIQDTEEAAKKLMQEAYQRGSADNITCVVVRFLDNPIDSSSNRIS 292
>ref|NP_194903.1| protein phosphatase 2C (PP2C), putative; protein id: At4g31750.1
[Arabidopsis thaliana] gi|7486331|pir||T05095
hypothetical protein F28M20.60 - Arabidopsis thaliana
gi|3281853|emb|CAA19748.1| putative protein [Arabidopsis
thaliana] gi|7270078|emb|CAB79893.1| putative protein
[Arabidopsis thaliana]
Length = 389
Score = 68.2 bits (165), Expect = 7e-11
Identities = 35/61 (57%), Positives = 42/61 (68%)
Frame = -3
Query: 567 MIKPIEDAEEAAKRLMQEAYQRGSSDNITCVVVRFVVNQGASSRSTSS*VSFHRKVVHTR 388
MIK IED EE AKRLM EAYQRGS+DNITCVVVRF +Q S+S+ + +V R
Sbjct: 323 MIKAIEDPEEGAKRLMMEAYQRGSADNITCVVVRFFSDQAGGIGSSSTNIPIDHGIVPDR 382
Query: 387 L 385
+
Sbjct: 383 I 383
>gb|AAL86334.1| unknown protein [Arabidopsis thaliana] gi|22136752|gb|AAM91695.1|
unknown protein [Arabidopsis thaliana]
Length = 311
Score = 68.2 bits (165), Expect = 7e-11
Identities = 35/61 (57%), Positives = 42/61 (68%)
Frame = -3
Query: 567 MIKPIEDAEEAAKRLMQEAYQRGSSDNITCVVVRFVVNQGASSRSTSS*VSFHRKVVHTR 388
MIK IED EE AKRLM EAYQRGS+DNITCVVVRF +Q S+S+ + +V R
Sbjct: 245 MIKAIEDPEEGAKRLMMEAYQRGSADNITCVVVRFFSDQAGGIGSSSTNIPIDHGIVPDR 304
Query: 387 L 385
+
Sbjct: 305 I 305
>gb|AAL87187.1|AF480497_15 putative protein phosphatase 2C [Oryza sativa (japonica
cultivar-group)]
Length = 243
Score = 60.5 bits (145), Expect = 1e-08
Identities = 29/42 (69%), Positives = 35/42 (83%)
Frame = -3
Query: 567 MIKPIEDAEEAAKRLMQEAYQRGSSDNITCVVVRFVVNQGAS 442
M + I D EEAAK+L+QEAY+R SSDNITCVVVRF+ QG+S
Sbjct: 199 MTRSIHDPEEAAKKLLQEAYKRESSDNITCVVVRFLHGQGSS 240
>pir||T50783 protein phosphatase 2C-like protein - Arabidopsis thaliana
gi|8979708|emb|CAB96829.1| protein phosphatase 2C-like
protein [Arabidopsis thaliana]
Length = 348
Score = 59.3 bits (142), Expect = 3e-08
Identities = 28/48 (58%), Positives = 38/48 (78%)
Frame = -3
Query: 567 MIKPIEDAEEAAKRLMQEAYQRGSSDNITCVVVRFVVNQGASSRSTSS 424
M+K +ED E++AK+L+ EA +RGS+DNITCVVVRF+ + ASS SS
Sbjct: 239 MVKEVEDPEDSAKKLVGEAIKRGSADNITCVVVRFLEKKSASSSHISS 286
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,652,519
Number of Sequences: 1393205
Number of extensions: 8804422
Number of successful extensions: 19323
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 18263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19316
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
