Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003094A_C01 KMC003094A_c01
(485 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA17097.1| hypothetical protein [Plasmodium yoelii yoelii] 35 0.44
ref|NP_704192.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.57
ref|NP_700704.1| hypothetical protein [Plasmodium falciparum 3D7... 34 0.98
ref|NP_700741.1| merozoite capping protein 1 [Plasmodium falcipa... 33 1.3
ref|NP_620793.1| CTD-binding SR-like protein rA9 [Rattus norvegi... 33 1.3
>gb|EAA17097.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1647
Score = 35.0 bits (79), Expect = 0.44
Identities = 31/111 (27%), Positives = 48/111 (42%), Gaps = 3/111 (2%)
Frame = +1
Query: 49 KEIRYNQAIKEKKKTRYREKENQNKTREKK*EMHRGANMKYKLKLNHQPAHFPHNPNQNQ 228
K I N+ EK K + E+ N NK R +K ++ NM F N+++
Sbjct: 630 KNIELNK--DEKNKIQNIERNNSNKIRTEKVLSYKQLNMNI----------FDSKKNEDR 677
Query: 229 HILQSSPK*PAVVKKNSHCSLDDLDHNQNS*YILWP---IIKIKIVLSKQH 372
H + K KK S+ +D D+N +I +P I+K KI +H
Sbjct: 678 HFINDKEK-----KKGSNVVIDKTDYNNEILHIEYPPPVILKKKINEQLKH 723
>ref|NP_704192.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498930|emb|CAD51008.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 4894
Score = 34.7 bits (78), Expect = 0.57
Identities = 20/64 (31%), Positives = 34/64 (52%), Gaps = 1/64 (1%)
Frame = +1
Query: 46 TKEIRYNQAIKEKKKTR-YREKENQNKTREKK*EMHRGANMKYKLKLNHQPAHFPHNPNQ 222
TK I Y +K+KKK + + NQN T +++ K +K N++ HF +N +
Sbjct: 2348 TKNILYKLFLKKKKKIQNIKYGHNQNCTSIPLENLYQFLGNKISMKQNYEKKHFVNNESN 2407
Query: 223 NQHI 234
N++I
Sbjct: 2408 NKNI 2411
>ref|NP_700704.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23495096|gb|AAN35428.1|AE014832_50 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 757
Score = 33.9 bits (76), Expect = 0.98
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +1
Query: 4 SQSNIKMQRGAHPFTKEIRYNQAIKEKKKTRYREKENQNKTREKK*EMHRGANMKYKLKL 183
+ NIK Q H T ++ N K+T+ E+EN K ++KK K+ +
Sbjct: 376 NMKNIKNQHNNHFITNQVNINSDTIINKQTKKEEEENNTKKKKKK------KKKKFLNQF 429
Query: 184 NHQPAHFPHN 213
N H HN
Sbjct: 430 NRTNIHNHHN 439
>ref|NP_700741.1| merozoite capping protein 1 [Plasmodium falciparum 3D7]
gi|23495134|gb|AAN35465.1|AE014833_36 merozoite capping
protein 1 [Plasmodium falciparum 3D7]
Length = 393
Score = 33.5 bits (75), Expect = 1.3
Identities = 19/60 (31%), Positives = 30/60 (49%)
Frame = +1
Query: 1 ISQSNIKMQRGAHPFTKEIRYNQAIKEKKKTRYREKENQNKTREKK*EMHRGANMKYKLK 180
+S SN K+ +G K+ +KKK + +K N NK + K + +G NMK+ K
Sbjct: 328 VSSSNKKLPKGLKNAAKKAGKKI---DKKKEQANKKNNNNKNKNKNKNLSKGNNMKHNKK 384
>ref|NP_620793.1| CTD-binding SR-like protein rA9 [Rattus norvegicus]
gi|7513927|pir||T31422 C-terminal domain-binding protein
rA9 - rat gi|1438534|gb|AAC52658.1| rA9
Length = 1473
Score = 33.5 bits (75), Expect = 1.3
Identities = 13/58 (22%), Positives = 32/58 (54%)
Frame = +1
Query: 76 KEKKKTRYREKENQNKTREKK*EMHRGANMKYKLKLNHQPAHFPHNPNQNQHILQSSP 249
+E+ + R +KE+ ++RE++ R +++++ + H PH+P + + + SP
Sbjct: 937 RERSRERMDKKESMTRSRERRRWRSRSPSVEHRTRRPHSREKHPHSPEKKGAVREVSP 994
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,942,739
Number of Sequences: 1393205
Number of extensions: 9478576
Number of successful extensions: 41301
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 33583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39852
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
