Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003090A_C01 KMC003090A_c01
(678 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM67046.1| unknown [Arabidopsis thaliana] 59 8e-08
ref|NP_192835.1| putative protein; protein id: At4g10970.1, supp... 57 2e-07
pir||T01880 hypothetical protein F8M12.11 - Arabidopsis thaliana... 57 2e-07
ref|NP_080559.1| RIKEN cDNA 1700010P07 [Mus musculus] gi|1283918... 36 0.55
ref|XP_223784.1| similar to RIKEN cDNA 1700010P07 [Mus musculus]... 36 0.55
>gb|AAM67046.1| unknown [Arabidopsis thaliana]
Length = 217
Score = 58.5 bits (140), Expect = 8e-08
Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 12/97 (12%)
Frame = -3
Query: 670 RGANRNKARFQAPASQRRAASGGFGAKQPLPS----LQKQQENVDVMPKQKPKTLDSLFA 503
R N N++RF AP +Q RA+ GF AKQ +Q+Q +Q P+TLDS FA
Sbjct: 113 RMTNTNQSRFIAPPAQNRASQRGFVAKQQQQQREKIVQQQANGGGGGQRQWPQTLDSRFA 172
Query: 502 NMKEQRM---RDLSMRNDVGPRNGGGNRRQ-----PW 416
NMKE+RM R R++VG NG G+ +Q PW
Sbjct: 173 NMKEERMRMRRFADNRSNVG-NNGAGSHQQQRSMVPW 208
>ref|NP_192835.1| putative protein; protein id: At4g10970.1, supported by cDNA:
93362. [Arabidopsis thaliana] gi|7486139|pir||T04292
hypothetical protein F25I24.180 - Arabidopsis thaliana
gi|4539371|emb|CAB40065.1| putative protein [Arabidopsis
thaliana] gi|7267795|emb|CAB81198.1| putative protein
[Arabidopsis thaliana]
Length = 217
Score = 57.0 bits (136), Expect = 2e-07
Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 12/97 (12%)
Frame = -3
Query: 670 RGANRNKARFQAPASQRRAASGGFGAKQPLPS----LQKQQENVDVMPKQKPKTLDSLFA 503
R N N++RF AP +Q RA+ GF KQ +Q+Q +Q P+TLDS FA
Sbjct: 113 RMTNTNQSRFIAPPAQNRASQRGFVGKQQQQQREKIVQQQANGGGGGQRQWPQTLDSRFA 172
Query: 502 NMKEQRM---RDLSMRNDVGPRNGGGNRRQ-----PW 416
NMKE+RM R R++VG NG G+ +Q PW
Sbjct: 173 NMKEERMRMRRFADNRSNVG-NNGAGSHQQQRSMVPW 208
>pir||T01880 hypothetical protein F8M12.11 - Arabidopsis thaliana
gi|3513730|gb|AAC33946.1| F8M12.11 gene product
[Arabidopsis thaliana]
Length = 248
Score = 57.0 bits (136), Expect = 2e-07
Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 12/97 (12%)
Frame = -3
Query: 670 RGANRNKARFQAPASQRRAASGGFGAKQPLPS----LQKQQENVDVMPKQKPKTLDSLFA 503
R N N++RF AP +Q RA+ GF KQ +Q+Q +Q P+TLDS FA
Sbjct: 144 RMTNTNQSRFIAPPAQNRASQRGFVGKQQQQQREKIVQQQANGGGGGQRQWPQTLDSRFA 203
Query: 502 NMKEQRM---RDLSMRNDVGPRNGGGNRRQ-----PW 416
NMKE+RM R R++VG NG G+ +Q PW
Sbjct: 204 NMKEERMRMRRFADNRSNVG-NNGAGSHQQQRSMVPW 239
>ref|NP_080559.1| RIKEN cDNA 1700010P07 [Mus musculus] gi|12839186|dbj|BAB24461.1|
unnamed protein product [Mus musculus]
gi|26344560|dbj|BAC35929.1| unnamed protein product [Mus
musculus]
Length = 478
Score = 35.8 bits (81), Expect = 0.55
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = -1
Query: 222 FDRLLLGLY---DSFFHGHDVWLRFLLMGLDHGTWNSSSYVSSLEWLLRLFNGVFFVINY 52
F L G++ D F GH V L L + T S +++ +L W+L LF G+FF++
Sbjct: 346 FGMTLTGVHTCGDYMFSGHTVVLTMLNFFVTEYTPRSWNFLHTLSWVLNLF-GIFFILAA 404
Query: 51 YV-YSMGFFVIF 19
+ YS+ F+ F
Sbjct: 405 HEHYSIDVFIAF 416
>ref|XP_223784.1| similar to RIKEN cDNA 1700010P07 [Mus musculus] [Rattus norvegicus]
Length = 415
Score = 35.8 bits (81), Expect = 0.55
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = -1
Query: 222 FDRLLLGLY---DSFFHGHDVWLRFLLMGLDHGTWNSSSYVSSLEWLLRLFNGVFFVINY 52
F L G++ D F GH V L L + T S +++ +L W+L LF G+FF++
Sbjct: 283 FGMTLTGVHTCGDYMFSGHTVVLTMLNFFVTEYTPRSWNFLHTLSWVLNLF-GIFFILAA 341
Query: 51 YV-YSMGFFVIF 19
+ YS+ F+ F
Sbjct: 342 HEHYSIDVFIAF 353
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 606,136,551
Number of Sequences: 1393205
Number of extensions: 13888540
Number of successful extensions: 39085
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 37248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39049
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
