Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003089A_C01 KMC003089A_c01
(1003 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_473073.2| hypothetical protein [Plasmodium falciparum 3D7... 36 0.81
gb|AAK60455.1| putative glycosyl transferase [Escherichia coli] 35 1.8
gb|EAA13023.1| ebiP4812 [Anopheles gambiae str. PEST] 35 2.4
gb|EAA13056.1| agCP14399 [Anopheles gambiae str. PEST] 35 2.4
ref|NP_491594.1| Transmembrane protein Xem1 African clawed frog ... 33 6.9
>ref|NP_473073.2| hypothetical protein [Plasmodium falciparum 3D7]
gi|23503414|gb|AAC71934.2| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 108
Score = 36.2 bits (82), Expect = 0.81
Identities = 14/44 (31%), Positives = 26/44 (58%)
Frame = -1
Query: 478 SLITIYMYCFPFLLCFWFVLLLTSYFSKYSTLSLLYFMGYYQIY 347
S I IY+Y + F F+F LTSY++ Y ++ + +F + ++
Sbjct: 3 SYIYIYIYIYFFFFFFFFFFFLTSYYNMYISIYIFFFFSLWLVH 46
>gb|AAK60455.1| putative glycosyl transferase [Escherichia coli]
Length = 389
Score = 35.0 bits (79), Expect = 1.8
Identities = 20/65 (30%), Positives = 36/65 (54%), Gaps = 2/65 (3%)
Frame = -3
Query: 938 PFQVHVWTIFLFI--RINSETQKLFKGSFYQELILTSKSIVEDFPYTSCVNVVIRKIKKK 765
PFQ W I L+I ++N +T+K++ + ++ I + F Y++ NV K K +
Sbjct: 103 PFQEIGWLINLYIIYKLNRKTKKMYLCALGEDYYWVKSCIKKRFKYSALDNVPGNKRKYR 162
Query: 764 YSIQF 750
YS++F
Sbjct: 163 YSLKF 167
>gb|EAA13023.1| ebiP4812 [Anopheles gambiae str. PEST]
Length = 1052
Score = 34.7 bits (78), Expect = 2.4
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = +3
Query: 150 IDDESQQLVVINIIIMHRNKAITIGNHNYLQIQMSIDNRKVKSEFGSILPQGSVQCSHMG 329
I+D + LV N+ HR + + ++ +I+ S+ V + I P+G+VQ + +G
Sbjct: 428 IEDVNGTLVFRNVSAEHRGQYACVAANSQGEIRASVSVNVVIAPKFEIAPEGAVQVAELG 487
Query: 330 SCKFH 344
+ +FH
Sbjct: 488 TVQFH 492
>gb|EAA13056.1| agCP14399 [Anopheles gambiae str. PEST]
Length = 827
Score = 34.7 bits (78), Expect = 2.4
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = +3
Query: 150 IDDESQQLVVINIIIMHRNKAITIGNHNYLQIQMSIDNRKVKSEFGSILPQGSVQCSHMG 329
I+D + LV N+ HR + + ++ +I+ S+ V + I P+G+VQ + +G
Sbjct: 203 IEDVNGTLVFRNVSAEHRGQYACVAANSQGEIRASVSVNVVIAPKFEIAPEGAVQVAELG 262
Query: 330 SCKFH 344
+ +FH
Sbjct: 263 TVQFH 267
>ref|NP_491594.1| Transmembrane protein Xem1 African clawed frog like, possibly
N-myristoylated (27.8 kD) [Caenorhabditis elegans]
gi|7499987|pir||T29527 hypothetical protein F27C1.2 -
Caenorhabditis elegans gi|1703606|gb|AAB37655.1|
Hypothetical protein F27C1.2 [Caenorhabditis elegans]
Length = 252
Score = 33.1 bits (74), Expect = 6.9
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = -1
Query: 511 RKQCLSPFVQKSLITIYMYCFPFLLCFWFVLLLTSYFSKYSTLSLLYFMGY 359
R SPF + LI + +Y F +L +W +L++ +Y + Y T +++ G+
Sbjct: 176 RTPATSPFSPQRLIQMLLYIFQLVLAYWLMLIVMTY-NTYLTAAVVLGAGF 225
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 802,226,567
Number of Sequences: 1393205
Number of extensions: 17003395
Number of successful extensions: 36921
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 33873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36497
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 57669751843
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
