Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003088A_C01 KMC003088A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191262.1| strictosidine synthase-related; protein id: At3... 116 3e-25
ref|NP_181662.1| strictosidine synthase-related; protein id: At2... 104 1e-21
pir||H86217 protein T27G7.16 [imported] - Arabidopsis thaliana g... 86 5e-16
ref|NP_563818.1| strictosidine synthase-related; protein id: At1... 86 5e-16
ref|NP_191261.1| strictosidine synthase-related; protein id: At3... 84 1e-15
>ref|NP_191262.1| strictosidine synthase-related; protein id: At3g57030.1
[Arabidopsis thaliana] gi|11280567|pir||T47763
hypothetical protein F24I3.110 - Arabidopsis thaliana
gi|6911873|emb|CAB72173.1| putative protein [Arabidopsis
thaliana]
Length = 372
Score = 116 bits (290), Expect = 3e-25
Identities = 56/96 (58%), Positives = 74/96 (76%)
Frame = -3
Query: 608 HVRRNSNGQFWVALHAKATPFAKWISSFPWLGNALPKVGFNFKQLHTSFAGWKPHATAIK 429
++RRNSNG+FWVALH+K FAK + W + + ++ + ++LH+ F G PHATAIK
Sbjct: 266 NIRRNSNGEFWVALHSKKGLFAKLSLTQTWFRDLVLRLPISPQRLHSLFTGGIPHATAIK 325
Query: 428 LSDKGEILEVLEDCEGKTLKFISEVEERDGKLWIAS 321
LS+ G++LEVLED EGKTL+FISEVEE+DGKLWI S
Sbjct: 326 LSESGKVLEVLEDKEGKTLRFISEVEEKDGKLWIGS 361
>ref|NP_181662.1| strictosidine synthase-related; protein id: At2g41300.1
[Arabidopsis thaliana] gi|25335893|pir||B84840 probable
strictosidine synthase [imported] - Arabidopsis thaliana
gi|3894193|gb|AAC78542.1| putative strictosidine
synthase [Arabidopsis thaliana]
Length = 395
Score = 104 bits (259), Expect = 1e-21
Identities = 52/97 (53%), Positives = 65/97 (66%), Gaps = 1/97 (1%)
Frame = -3
Query: 608 HVRRNSNGQFWVALHAKATPFAKWISSFPWLGNALPKVGFNFKQLHTSFAGWKPHATAIK 429
++RR G FWVALH+K TPF++ PW+G K + L F G KPHA A+K
Sbjct: 288 NIRRTETGDFWVALHSKKTPFSRLSMIHPWVGKFFIKT-LKMELLVFLFEGGKPHAVAVK 346
Query: 428 LSDK-GEILEVLEDCEGKTLKFISEVEERDGKLWIAS 321
LS K GEI+E+LED EGK +KFISEV+ERDG+LW S
Sbjct: 347 LSGKTGEIMEILEDSEGKNMKFISEVQERDGRLWFGS 383
>pir||H86217 protein T27G7.16 [imported] - Arabidopsis thaliana
gi|6664319|gb|AAF22901.1|AC006932_18 T27G7.16
[Arabidopsis thaliana]
Length = 421
Score = 85.5 bits (210), Expect = 5e-16
Identities = 42/106 (39%), Positives = 67/106 (62%)
Frame = -3
Query: 608 HVRRNSNGQFWVALHAKATPFAKWISSFPWLGNALPKVGFNFKQLHTSFAGWKPHATAIK 429
++R N +G FWVA+H F ++ +P + K+ + K + G PHA A+K
Sbjct: 314 NIRTNKDGDFWVAVHCHRNIFTHLMAHYPRVRKFFLKLPISVKFQYLLQVGGWPHAVAVK 373
Query: 428 LSDKGEILEVLEDCEGKTLKFISEVEERDGKLWIASRA*CLLLAFI 291
S++G++L+VLED +GK +K +SEVEE+DGKLW+ S +L++FI
Sbjct: 374 YSEEGKVLKVLEDSKGKVVKAVSEVEEKDGKLWMGS----VLMSFI 415
>ref|NP_563818.1| strictosidine synthase-related; protein id: At1g08470.1, supported
by cDNA: gi_16930480, supported by cDNA: gi_17381181
[Arabidopsis thaliana]
gi|16930481|gb|AAL31926.1|AF419594_1 At1g08470/T27G7_9
[Arabidopsis thaliana] gi|17381182|gb|AAL36403.1|
unknown protein [Arabidopsis thaliana]
gi|21436203|gb|AAM51389.1| unknown protein [Arabidopsis
thaliana]
Length = 390
Score = 85.5 bits (210), Expect = 5e-16
Identities = 42/106 (39%), Positives = 67/106 (62%)
Frame = -3
Query: 608 HVRRNSNGQFWVALHAKATPFAKWISSFPWLGNALPKVGFNFKQLHTSFAGWKPHATAIK 429
++R N +G FWVA+H F ++ +P + K+ + K + G PHA A+K
Sbjct: 283 NIRTNKDGDFWVAVHCHRNIFTHLMAHYPRVRKFFLKLPISVKFQYLLQVGGWPHAVAVK 342
Query: 428 LSDKGEILEVLEDCEGKTLKFISEVEERDGKLWIASRA*CLLLAFI 291
S++G++L+VLED +GK +K +SEVEE+DGKLW+ S +L++FI
Sbjct: 343 YSEEGKVLKVLEDSKGKVVKAVSEVEEKDGKLWMGS----VLMSFI 384
>ref|NP_191261.1| strictosidine synthase-related; protein id: At3g57020.1, supported
by cDNA: 98698., supported by cDNA: gi_14532519
[Arabidopsis thaliana] gi|11280566|pir||T47762
hypothetical protein F24I3.100 - Arabidopsis thaliana
gi|6911872|emb|CAB72172.1| putative protein [Arabidopsis
thaliana] gi|14532520|gb|AAK63988.1| AT3g57020/F24I3_100
[Arabidopsis thaliana]
Length = 370
Score = 84.0 bits (206), Expect = 1e-15
Identities = 42/98 (42%), Positives = 59/98 (59%), Gaps = 2/98 (2%)
Frame = -3
Query: 608 HVRRNSNGQFWVALHAKATPFAKWISSFPWLGNALPKVGFNFKQLHTSFAGWKPHATAIK 429
++R S G FW+ LH K + I + WLG + K + + G+KPH A+K
Sbjct: 262 NIRLTSTGDFWIGLHCKKNLIGRLIVKYKWLGKLVEKT-MKLEYVIAFINGFKPHGVAVK 320
Query: 428 LS-DKGEILEVLEDCEGKTLKFISEVEER-DGKLWIAS 321
+S + GE+LE+LED EGKT+K++SE ER DGKLW S
Sbjct: 321 ISGETGEVLELLEDKEGKTMKYVSEAYERDDGKLWFGS 358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,006,480
Number of Sequences: 1393205
Number of extensions: 10678820
Number of successful extensions: 19812
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 19378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19790
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
