Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003077A_C01 KMC003077A_c01
(480 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA41047.1| GLP_447_7571_4170 [Giardia lamblia ATCC 50803] 33 2.1
gb|EAA20614.1| hypothetical protein [Plasmodium yoelii yoelii] 31 6.1
ref|NP_178432.1| unknown protein; protein id: At2g03330.1 [Arabi... 31 8.0
ref|NP_587943.1| hypothetical protein [Schizosaccharomyces pombe... 31 8.0
>gb|EAA41047.1| GLP_447_7571_4170 [Giardia lamblia ATCC 50803]
Length = 1133
Score = 32.7 bits (73), Expect = 2.1
Identities = 21/88 (23%), Positives = 38/88 (42%)
Frame = -1
Query: 438 QDPLWSVVFYGNPTQPPSKAHRPSSRITDKGGKEERGKRSGVRELCER*SKWGKERGRST 259
QDPL +FY +PT+ S+ R + E GV+ L W
Sbjct: 404 QDPLSDYMFYLSPTRISSEMDRLEFEL------REHQTNYGVKVLTSLFGSWFYNVTPEE 457
Query: 258 DLLKEGVDLQFHHSIVDSILTIHLKNII 175
+LL EG L+ I + ++++++ ++
Sbjct: 458 ELLFEGAFLELREKIAEGTISVYMRELL 485
>gb|EAA20614.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2329
Score = 31.2 bits (69), Expect = 6.1
Identities = 20/70 (28%), Positives = 33/70 (46%), Gaps = 1/70 (1%)
Frame = -3
Query: 217 YC*FNLNHSLKEY-YRNLRSNGIKPMVHRWTNIIKVHPSGHLYSWNRKMILKNLNLSHSQ 41
+C NH+ ++ +N + N M+++W N + H + +K LK N SH
Sbjct: 338 HCEDGYNHTFDKHDEKNSKMNSKNDMLNKWVNDFPLSYVQHNNNRKKKKNLKKKNFSH-- 395
Query: 40 FNMN*LKKQF 11
FN +KK F
Sbjct: 396 FNYEIIKKVF 405
>ref|NP_178432.1| unknown protein; protein id: At2g03330.1 [Arabidopsis thaliana]
gi|25411001|pir||B84447 hypothetical protein At2g03330
[imported] - Arabidopsis thaliana
gi|4335772|gb|AAD17449.1| unknown protein [Arabidopsis
thaliana]
Length = 385
Score = 30.8 bits (68), Expect = 8.0
Identities = 14/36 (38%), Positives = 20/36 (54%)
Frame = +2
Query: 236 STPSFNRSVDLPLSLPHLLHLSHSSLTPDLFPLSSF 343
+ PS RS +LPLS+ L +L + P +FP F
Sbjct: 52 TNPSMRRSQNLPLSMTQLKYLDNKMPLPKVFPFLGF 87
>ref|NP_587943.1| hypothetical protein [Schizosaccharomyces pombe]
gi|5701968|emb|CAB52160.1| hypothetical protein
[Schizosaccharomyces pombe]
Length = 364
Score = 30.8 bits (68), Expect = 8.0
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Frame = -3
Query: 202 LNHSLKEYYRNLRSN------GIKPMVHRWTNIIKVHPSGHLYSWNRKMILKNLNL 53
L+H LK+ YRNL SN + + W N + WN K+ +K L L
Sbjct: 47 LDHHLKQIYRNLTSNSPLHTLSLLQKMASWNNGLACVRVFQAIDWNSKIFIKMLQL 102
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,664,487
Number of Sequences: 1393205
Number of extensions: 9487795
Number of successful extensions: 24856
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24838
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
